| Chain sequence(s) |
A: QVQLVESGGGLVQAGGSLRLSCAASGSIFSINAMGWFRQAPGKERELVAAITSGGSTNYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCVDDSWYGYEYDYWGQGTQVTVSS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:48)
[INFO] Main: Simulation completed successfully. (00:00:49)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.6459 | |
| 2 | V | A | -1.2091 | |
| 3 | Q | A | -1.0744 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 1.0944 | |
| 6 | E | A | 0.1797 | |
| 7 | S | A | -0.3591 | |
| 8 | G | A | -0.7846 | |
| 9 | G | A | -0.4802 | |
| 11 | G | A | 0.2188 | |
| 12 | L | A | 1.1590 | |
| 13 | V | A | 0.0618 | |
| 14 | Q | A | -1.2021 | |
| 15 | A | A | -1.5692 | |
| 16 | G | A | -1.2833 | |
| 17 | G | A | -1.0537 | |
| 18 | S | A | -1.0845 | |
| 19 | L | A | -0.6918 | |
| 20 | R | A | -1.5003 | |
| 21 | L | A | 0.0000 | |
| 22 | S | A | -0.3195 | |
| 23 | C | A | 0.0000 | |
| 24 | A | A | -0.1406 | |
| 25 | A | A | -0.3782 | |
| 26 | S | A | -0.7689 | |
| 27 | G | A | -0.6994 | |
| 28 | S | A | -0.0862 | |
| 29 | I | A | 0.0000 | |
| 30 | F | A | 1.6270 | |
| 35 | S | A | 0.9473 | |
| 36 | I | A | 1.0191 | |
| 37 | N | A | 0.5008 | |
| 38 | A | A | 0.0588 | |
| 39 | M | A | 0.0000 | |
| 40 | G | A | 0.0000 | |
| 41 | W | A | 0.0000 | |
| 42 | F | A | 0.1158 | |
| 43 | R | A | 0.0000 | |
| 44 | Q | A | -1.8144 | |
| 45 | A | A | -1.8714 | |
| 46 | P | A | -1.4558 | |
| 47 | G | A | -1.9077 | |
| 48 | K | A | -3.2236 | |
| 49 | E | A | -3.3197 | |
| 50 | R | A | -2.1533 | |
| 51 | E | A | -1.4902 | |
| 52 | L | A | -0.4321 | |
| 53 | V | A | 0.0000 | |
| 54 | A | A | 0.0000 | |
| 55 | A | A | -0.4689 | |
| 56 | I | A | 0.0000 | |
| 57 | T | A | -0.6915 | |
| 58 | S | A | -0.1345 | |
| 59 | G | A | -0.6183 | |
| 63 | G | A | -0.8424 | |
| 64 | S | A | -0.8191 | |
| 65 | T | A | -0.8919 | |
| 66 | N | A | -1.6327 | |
| 67 | Y | A | -1.4625 | |
| 68 | A | A | -1.5684 | |
| 69 | D | A | -2.5968 | |
| 70 | S | A | -1.7006 | |
| 71 | V | A | 0.0000 | |
| 72 | K | A | -2.8294 | |
| 74 | G | A | -1.7675 | |
| 75 | R | A | -1.5434 | |
| 76 | F | A | 0.0000 | |
| 77 | T | A | -1.0056 | |
| 78 | I | A | 0.0000 | |
| 79 | S | A | -0.4527 | |
| 80 | R | A | -0.7076 | |
| 81 | D | A | -1.0541 | |
| 82 | N | A | -0.7076 | |
| 83 | A | A | -0.9215 | |
| 84 | K | A | -2.1531 | |
| 85 | N | A | -1.1892 | |
| 86 | T | A | -0.8762 | |
| 87 | V | A | 0.0000 | |
| 88 | Y | A | -0.4387 | |
| 89 | L | A | 0.0000 | |
| 90 | Q | A | -1.0783 | |
| 91 | M | A | 0.0000 | |
| 92 | N | A | -1.2265 | |
| 93 | S | A | -1.1062 | |
| 94 | L | A | 0.0000 | |
| 95 | K | A | -2.0656 | |
| 96 | P | A | -1.7940 | |
| 97 | E | A | -2.2566 | |
| 98 | D | A | 0.0000 | |
| 99 | T | A | -0.7856 | |
| 100 | A | A | 0.0000 | |
| 101 | V | A | -0.2159 | |
| 102 | Y | A | 0.0000 | |
| 103 | Y | A | -0.0254 | |
| 104 | C | A | 0.0000 | |
| 105 | V | A | 0.0000 | |
| 106 | D | A | 0.0000 | |
| 107 | D | A | -0.1991 | |
| 108 | S | A | -0.0997 | |
| 109 | W | A | 1.4384 | |
| 110 | Y | A | 1.4974 | |
| 112 | G | A | 0.1767 | |
| 113 | Y | A | 0.6094 | |
| 114 | E | A | -1.2556 | |
| 115 | Y | A | -0.8220 | |
| 116 | D | A | -1.9144 | |
| 117 | Y | A | -1.0051 | |
| 118 | W | A | -0.0718 | |
| 119 | G | A | -0.0828 | |
| 120 | Q | A | -0.8530 | |
| 121 | G | A | -0.4156 | |
| 122 | T | A | -0.4574 | |
| 123 | Q | A | -0.4777 | |
| 124 | V | A | 0.0000 | |
| 125 | T | A | -0.1406 | |
| 126 | V | A | 0.0000 | |
| 127 | S | A | -0.6620 | |
| 128 | S | A | -0.8174 |