Project name: query_structure

Status: done

Started: 2026-03-16 23:02:11
Settings
Chain sequence(s) A: CTCKDKVCYLNGTPCAESCVYLPCFTGVIG
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:15)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:16)
Show buried residues

Minimal score value
-3.0655
Maximal score value
2.663
Average score
0.3564
Total score value
10.6917

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 C A 0.8081
2 T A 0.1609
3 C A -0.4714
4 K A -2.5779
5 D A -3.0655
6 K A -2.5333
7 V A -1.1784
8 C A 0.0000
9 Y A 0.1963
10 L A 0.3968
11 N A -0.9606
12 G A -0.7205
13 T A -0.2048
14 P A -0.2911
15 C A 0.1649
16 A A -0.5276
17 E A -1.1460
18 S A 0.1057
19 C A 1.2262
20 V A 2.1797
21 Y A 2.1665
22 L A 2.0129
23 P A 1.4523
24 C A 1.7819
25 F A 2.3735
26 T A 1.4765
27 G A 1.7156
28 V A 2.6281
29 I A 2.6630
30 G A 0.8599
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018