Project name: P01 [mutate: WF3A]

Status: done

Started: 2025-10-06 13:39:08
Settings
Chain sequence(s) A: KIWIKIWIKLLKIW
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues WF3A
Energy difference between WT (input) and mutated protein (by FoldX) 0.610587 kcal/mol
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:17)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:22)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:33)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:34)
Show buried residues

Minimal score value
0.1227
Maximal score value
3.2521
Average score
1.6258
Total score value
22.7616

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A 0.2642
2 I A 2.5216
3 F A 3.2521 mutated: WF3A
4 I A 2.4674
5 K A 0.9465
6 I A 2.3286
7 W A 2.5218
8 I A 1.3763
9 K A 0.1227
10 L A 1.5351
11 L A 1.4231
12 K A 0.1522
13 I A 2.0025
14 W A 1.8475
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018