Project name: K88

Status: done

Started: 2024-12-27 01:59:01
Settings
Chain sequence(s) A: AWMTGDFNGSVDIGGSITADDYRQKWEWKVGTGLNGFGNVLNDLTNGGTKLTITVTGNKPILLGRTKEAFATPVTGGVDGIPHIAFTDYEGASVVLRNPDGETNKKGLAYFVLPMKNAEGTKVGSVKVNASYAGVLGRGGVTSADGELLSLFADGLSSIFYGGLPRGSELSAGSAAAARTKLFGSLSRNDILGQIQRVNANITSLVDVAGSYRENMEYTDGTVVSAAYALGIANGQTIEATFNQAVTTSTQWSAPLNVAITYY
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:36)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:37)
Show buried residues

Minimal score value
-3.037
Maximal score value
1.3759
Average score
-0.7068
Total score value
-185.8895

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
21 A A 0.5329
22 W A 0.7493
23 M A 0.9025
24 T A -0.2562
25 G A -0.8699
26 D A -1.7497
27 F A -0.7980
28 N A -1.5303
29 G A -0.7919
30 S A -0.7762
31 V A -0.6555
32 D A -1.3449
33 I A 0.0000
34 G A 0.0000
35 G A 0.0000
36 S A -0.9715
37 I A 0.0000
38 T A -1.0672
39 A A -1.0104
40 D A -2.3216
41 D A -2.0844
42 Y A -1.0714
43 R A -2.5762
44 Q A -2.9291
45 K A -2.4139
46 W A -0.8194
47 E A -1.6073
48 W A -0.0295
49 K A -1.0898
50 V A 0.6222
51 G A -0.3553
52 T A -0.6620
53 G A -1.1769
54 L A 0.0000
55 N A -2.0117
56 G A -1.4275
57 F A -1.0055
58 G A -1.0866
59 N A -0.9456
60 V A -1.1284
61 L A -0.9896
62 N A -1.9731
63 D A -1.8834
64 L A -1.3533
65 T A -1.4378
66 N A -1.6539
67 G A -1.3322
68 G A -1.4569
69 T A -1.4907
70 K A -1.5442
71 L A 0.0000
72 T A -0.6836
73 I A 0.0000
74 T A -0.5762
75 V A 0.0000
76 T A -0.9590
77 G A -1.3238
78 N A -1.4953
79 K A -1.1844
80 P A -0.4670
81 I A 0.0000
82 L A 0.0000
83 L A -0.2503
84 G A -0.6782
85 R A -2.0836
86 T A -2.1346
87 K A -2.9070
88 E A -2.8675
89 A A 0.0000
90 F A -0.2620
91 A A -0.3542
92 T A 0.0000
93 P A -0.5930
94 V A -0.2584
95 T A -0.3116
96 G A -0.4816
97 G A -0.3302
98 V A 0.7234
99 D A -0.7338
100 G A -0.3670
101 I A 0.0000
102 P A -0.0905
103 H A 0.3163
104 I A 0.0000
105 A A 0.0268
106 F A 0.0000
107 T A -0.4252
108 D A 0.0000
109 Y A -1.0962
110 E A -2.0046
111 G A -1.3780
112 A A -0.6849
113 S A -0.1336
114 V A 0.0000
115 V A 1.3255
116 L A 0.0000
117 R A -1.8151
118 N A -2.3829
119 P A -2.1649
120 D A -2.9965
121 G A -2.7674
122 E A -3.0370
123 T A -2.0688
124 N A -2.0321
125 K A -2.2466
126 K A -2.1503
127 G A 0.0000
128 L A -0.5867
129 A A 0.0000
130 Y A 0.0000
131 F A 0.0000
132 V A 0.6347
133 L A 0.0000
134 P A -0.6144
135 M A 0.0000
136 K A -1.8957
137 N A -1.9169
138 A A -1.7087
139 E A -2.5258
140 G A -1.9192
141 T A -1.7926
142 K A -2.4000
143 V A -1.4589
144 G A -1.3236
145 S A -0.6690
146 V A 0.0000
147 K A -0.4820
148 V A 0.0000
149 N A -0.5216
150 A A 0.0000
151 S A 0.0000
152 Y A 0.0000
153 A A 0.0000
154 G A 0.0000
155 V A 0.0000
156 L A 0.0000
157 G A 0.0000
158 R A -0.6833
159 G A 0.0000
160 G A 0.0786
161 V A 1.3759
162 T A 0.3836
163 S A -0.3140
164 A A -0.5820
165 D A -1.3363
166 G A 0.0000
167 E A -0.8125
168 L A 0.0000
169 L A 0.0000
170 S A 0.0000
171 L A 0.0000
172 F A 0.0000
173 A A 0.0000
174 D A -2.3090
175 G A -0.7583
176 L A 1.1199
177 S A 0.0848
178 S A 0.0000
179 I A 0.0000
180 F A 0.0000
181 Y A 0.0720
182 G A 0.1134
183 G A 0.0000
184 L A 0.0000
185 P A -1.5514
186 R A -2.7955
187 G A -2.2402
188 S A 0.0000
189 E A 0.0000
190 L A -0.9262
191 S A -0.5197
192 A A -0.3207
193 G A 0.0000
194 S A -0.3663
195 A A -0.6570
196 A A 0.0000
197 A A 0.0000
198 A A -0.5881
199 R A -0.5181
200 T A 0.0000
201 K A -1.8757
202 L A -0.2624
203 F A 0.0000
204 G A -1.0414
205 S A 0.0000
206 L A 0.0000
207 S A -1.9417
208 R A -2.2679
209 N A -2.4788
210 D A -2.4168
211 I A 0.0000
212 L A -1.5332
213 G A -1.6580
214 Q A -1.8559
215 I A 0.0000
216 Q A -0.9709
217 R A -1.7085
218 V A 0.3320
219 N A 0.0000
220 A A -0.2149
221 N A -0.3886
222 I A 0.0000
223 T A -0.6207
224 S A -0.8653
225 L A 0.0000
226 V A 0.0501
227 D A -0.6520
228 V A -0.0702
229 A A 0.0292
230 G A -0.1829
231 S A -0.5056
232 Y A -0.7568
233 R A -2.2157
234 E A 0.0000
235 N A -0.9680
236 M A 0.0000
237 E A -1.1417
238 Y A -0.7989
239 T A -1.0741
240 D A -1.6630
241 G A -0.3086
242 T A -0.1598
243 V A -0.0335
244 V A 0.0000
245 S A 0.0000
246 A A 0.0000
247 A A 0.0000
248 Y A 0.0000
249 A A 0.0000
250 L A 0.0000
251 G A 0.0000
252 I A 0.0000
253 A A -1.1176
254 N A -1.9985
255 G A -1.3465
256 Q A -0.9313
257 T A -0.6852
258 I A 0.0000
259 E A -0.7860
260 A A 0.0000
261 T A -1.1129
262 F A 0.0000
263 N A -2.0898
264 Q A -1.8702
265 A A -1.0827
266 V A -0.3675
267 T A -0.1489
268 T A -0.0565
269 S A -0.5953
270 T A -0.9045
271 Q A -1.7866
272 W A 0.0000
273 S A -1.2054
274 A A 0.0000
275 P A -0.8459
276 L A 0.0000
277 N A -1.1084
278 V A 0.0000
279 A A -0.8000
280 I A -0.5958
281 T A -0.5970
282 Y A 0.2460
283 Y A 0.6049
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Laboratory of Theory of Biopolymers 2018