Project name: cetux

Status: done

Started: 2025-12-29 08:08:10
Settings
Chain sequence(s) H: QVQLKQSGPGLVQPSQSLSITCTVSGFSLTNYGVHWVRQSPGKGLEWLGVIWSGGNTDYNTPFTSRLSINKDNSKSQVFFKMNSLQSNDTAIYYCARALTYYDYEFAYWGQGTLVTVSA
L: DILLTQSPVILSVSPGERVSFSCRASQSIGTNIHWYQQRTNGSPRLLIKYASESISGIPSRFSGSGSGTDFTLSINSVESEDIADYYCQQNNNWPTTFGAGTKLELK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:06)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:07)
Show buried residues

Minimal score value
-3.1092
Maximal score value
1.9849
Average score
-0.5269
Total score value
-119.0835

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.4342
2 V H -0.8269
3 Q H -1.5526
4 L H 0.0000
5 K H -2.3028
6 Q H 0.0000
7 S H -0.7094
8 G H -0.7714
9 P H 0.3170
11 G H 0.5622
12 L H 1.3624
13 V H -0.2365
14 Q H -1.2778
15 P H -1.4009
16 S H -1.6025
17 Q H -2.0581
18 S H -1.7876
19 L H 0.0000
20 S H -0.7670
21 I H 0.0000
22 T H -0.5264
23 C H 0.0000
24 T H -1.1356
25 V H 0.0000
26 S H -1.1819
27 G H -0.9576
28 F H -0.5469
29 S H -0.9745
30 L H 0.0000
35 T H -0.9851
36 N H -0.8828
37 Y H 0.5180
38 G H 0.0000
39 V H 0.0000
40 H H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.3064
45 S H 0.0000
46 P H -1.1749
47 G H -1.7293
48 K H -2.2061
49 G H -1.1586
50 L H 0.0000
51 E H 0.0000
52 W H 0.0000
53 L H 0.0000
54 G H 0.0000
55 V H 0.0000
56 I H 0.0000
57 W H -0.2650
58 S H -0.6249
59 G H -1.0997
63 G H -1.5364
64 N H -1.7173
65 T H -1.0427
66 D H -0.5463
67 Y H -0.1868
68 N H -0.1271
69 T H -0.2060
70 P H -0.4039
71 F H 0.0000
72 T H -0.4169
74 S H -0.6452
75 R H -1.1734
76 L H 0.0000
77 S H -1.0481
78 I H 0.0000
79 N H -1.8043
80 K H -1.5954
81 D H -2.0125
82 N H -2.5718
83 S H -1.8770
84 K H -2.4885
85 S H -1.7638
86 Q H -1.6115
87 V H 0.0000
88 F H -0.2687
89 F H 0.0000
90 K H -1.6848
91 M H 0.0000
92 N H -2.0976
93 S H -1.5867
94 L H 0.0000
95 Q H -2.0564
96 S H -1.4824
97 N H -2.0345
98 D H 0.0000
99 T H -0.2485
100 A H 0.0000
101 I H 0.9491
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 A H 0.0000
108 L H 1.0970
109 T H 1.2023
110 Y H 1.8923
111 Y H 1.9849
112 D H 0.0000
113 Y H 0.5920
114 E H 0.0000
115 F H 0.0000
116 A H 0.2220
117 Y H 0.1336
118 W H -0.5092
119 G H 0.0000
120 Q H -1.6945
121 G H 0.0000
122 T H 0.0000
123 L H 1.5756
124 V H 0.0000
125 T H 0.4206
126 V H 0.0000
127 S H -0.4217
128 A H -0.1735
1 D L -1.3623
2 I L 0.0000
3 L L 0.7406
4 L L 0.0000
5 T L -0.1116
6 Q L 0.1106
7 S L 0.2093
8 P L 0.7980
9 V L 1.8261
10 I L 1.1288
11 L L 0.4173
12 S L -0.5342
13 V L 0.0000
14 S L -1.7888
15 P L -1.7812
16 G L -2.0969
17 E L -2.8783
18 R L -3.1092
19 V L 0.0000
20 S L -0.8410
21 F L 0.0000
22 S L -0.4821
23 C L 0.0000
24 R L -1.6658
25 A L 0.0000
26 S L -0.7373
27 Q L -1.1940
28 S L -1.2648
29 I L 0.0000
36 G L -0.8800
37 T L -0.6242
38 N L -0.6206
39 I L 0.0000
40 H L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 R L -1.7446
46 T L -1.1784
47 N L -1.8028
48 G L -1.4864
49 S L -0.9651
50 P L 0.0000
51 R L -0.6562
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 K L -0.6657
56 Y L -0.5053
57 A L 0.0000
65 S L -1.1747
66 E L -1.8614
67 S L -1.1008
68 I L -0.5481
69 S L -0.4820
70 G L -0.4479
71 I L -0.1836
72 P L -0.2676
74 S L -0.5111
75 R L -1.0247
76 F L 0.0000
77 S L -0.8340
78 G L -0.7007
79 S L -0.7404
80 G L -0.8761
83 S L -0.9208
84 G L -1.0839
85 T L -1.4231
86 D L -1.7660
87 F L 0.0000
88 T L -0.6584
89 L L 0.0000
90 S L 0.0000
91 I L 0.0000
92 N L -2.3655
93 S L -2.2686
94 V L 0.0000
95 E L -1.9340
96 S L -1.5675
97 E L -1.8290
98 D L 0.0000
99 I L -0.3856
100 A L 0.0000
101 D L -0.8739
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 N L -0.4744
108 N L -1.0406
109 N L -0.9537
114 W L 0.0181
115 P L -0.2449
116 T L 0.0000
117 T L -0.0158
118 F L 0.1958
119 G L 0.0000
120 A L -0.0129
121 G L 0.0404
122 T L 0.0000
123 K L -0.4682
124 L L 0.0000
125 E L -0.8902
126 L L -1.1143
127 K L -1.8595
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Laboratory of Theory of Biopolymers 2018