Project name: 181

Status: done

Started: 2025-06-25 13:22:45
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Chain sequence(s) H: QVQLQESGGGSVQAGGSLRLSCAASGSTYSSNCMGWFRQAPGKEREEVASMSIRSSNAYYSDSVKGRFTISHDGSKNTLYLQMNSLKAEDTAMYYCAAAYGGSRCDYNYRGQGTQVTVSS
input PDB
Selected Chain(s) H
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with H chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:05)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:06)
Show buried residues

Minimal score value
-3.3182
Maximal score value
0.9705
Average score
-0.935
Total score value
-112.1981

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.7959
2 V H 0.0000
3 Q H -2.0923
4 L H -1.7968
5 Q H -1.9115
6 E H 0.0000
7 S H -0.8870
8 G H -0.9144
9 G H -0.8609
11 G H -0.6868
12 S H -0.5801
13 V H -0.7243
14 Q H -1.5796
15 A H -1.5636
16 G H -1.3112
17 G H -1.0808
18 S H -1.0350
19 L H -0.6998
20 R H -1.2760
21 L H 0.0000
22 S H -0.5698
23 C H 0.0000
24 A H -1.0567
25 A H 0.0000
26 S H -1.3062
27 G H -1.0666
28 S H -0.5464
29 T H 0.0176
30 Y H 0.9705
35 S H 0.3838
36 S H -0.0614
37 N H 0.0000
38 C H 0.0000
39 M H 0.0000
40 G H 0.0000
41 W H 0.0000
42 F H -0.9724
43 R H 0.0000
44 Q H -1.9097
45 A H -1.7065
46 P H -1.2675
47 G H -1.7849
48 K H -2.8937
49 E H -3.3182
50 R H -2.5354
51 E H -2.3050
52 E H -2.2906
53 V H 0.0000
54 A H 0.0000
55 S H 0.0000
56 M H 0.0000
57 S H -0.6223
58 I H -0.7918
59 R H -1.7961
62 S H -1.2906
63 S H -1.1288
64 N H -1.0739
65 A H 0.1506
66 Y H 0.5011
67 Y H -0.5132
68 S H -1.4981
69 D H -2.5272
70 S H -1.9659
71 V H 0.0000
72 K H -2.3018
74 G H -1.6774
75 R H -1.5247
76 F H 0.0000
77 T H -0.5208
78 I H 0.0000
79 S H -0.3055
80 H H -0.7068
81 D H -1.3021
82 G H -1.5366
83 S H -1.4744
84 K H -2.2839
85 N H -1.4502
86 T H -1.1628
87 L H 0.0000
88 Y H -0.1982
89 L H 0.0000
90 Q H -0.7787
91 M H 0.0000
92 N H -1.2075
93 S H -1.1889
94 L H 0.0000
95 K H -2.0766
96 A H -1.5838
97 E H -2.1116
98 D H 0.0000
99 T H -0.9937
100 A H 0.0000
101 M H -0.3452
102 Y H 0.0000
103 Y H -0.9469
104 C H 0.0000
105 A H 0.0000
106 A H 0.0000
107 A H 0.0000
108 Y H -0.2281
109 G H -1.4026
110 G H -1.2815
111 S H -1.5863
112 R H -2.5968
113 C H -2.0043
114 D H -2.6131
115 Y H -1.7925
116 N H -1.9694
117 Y H -1.9034
118 R H -2.2584
119 G H 0.0000
120 Q H -1.7428
121 G H -1.1561
122 T H -0.8346
123 Q H -0.8170
124 V H 0.0000
125 T H -0.8002
126 V H 0.0000
127 S H -1.1087
128 S H -0.8529
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Laboratory of Theory of Biopolymers 2018