Project name: query_structure

Status: done

Started: 2026-03-16 23:17:15
Settings
Chain sequence(s) A: PGCAFEGESCNVQFYPCCPGLGLTCIPGNPDGTCYYL
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:09)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:09)
Show buried residues

Minimal score value
-1.9324
Maximal score value
2.6712
Average score
0.3531
Total score value
13.0651

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 P A -0.0093
2 G A 0.3919
3 C A 1.2073
4 A A 0.0000
5 F A 0.8088
6 E A -0.8685
7 G A -1.2391
8 E A -1.7893
9 S A -0.8983
10 C A 0.0000
11 N A 0.2040
12 V A 0.7491
13 Q A 0.1200
14 F A 2.2374
15 Y A 1.8942
16 P A 1.1406
17 C A 0.6290
18 C A 0.5917
19 P A 0.2639
20 G A 0.1243
21 L A 1.5423
22 G A 1.2927
23 L A 0.0000
24 T A 1.4379
25 C A 0.5883
26 I A 0.9327
27 P A -0.1045
28 G A 0.0000
29 N A -1.7313
30 P A -1.4212
31 D A -1.9324
32 G A 0.0000
33 T A -0.3146
34 C A 0.0000
35 Y A 1.9091
36 Y A 2.6712
37 L A 2.6372
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Laboratory of Theory of Biopolymers 2018