| Chain sequence(s) |
A: QVQLVESGGGLVQAGGSLRLSCAASGFPVYHRSMLWYRQAPGKEREWVAAIKSNGAGTWYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCTVGVGTNYWGQGTQVTVS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:24)
[INFO] Main: Simulation completed successfully. (00:02:25)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.3750 | |
| 2 | V | A | -0.5926 | |
| 3 | Q | A | -0.7873 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.4270 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.7487 | |
| 8 | G | A | -1.0536 | |
| 9 | G | A | -0.8503 | |
| 10 | G | A | -0.0821 | |
| 11 | L | A | 1.0045 | |
| 12 | V | A | -0.0235 | |
| 13 | Q | A | -1.2364 | |
| 14 | A | A | -1.3959 | |
| 15 | G | A | -1.3146 | |
| 16 | G | A | -0.8711 | |
| 17 | S | A | -1.2866 | |
| 18 | L | A | -1.0154 | |
| 19 | R | A | -2.2826 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.5571 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.3290 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.6883 | |
| 26 | G | A | -0.9014 | |
| 27 | F | A | -0.5743 | |
| 28 | P | A | -0.8837 | |
| 29 | V | A | 0.0000 | |
| 30 | Y | A | -1.2073 | |
| 31 | H | A | -1.9068 | |
| 32 | R | A | -2.3151 | |
| 33 | S | A | -1.4135 | |
| 34 | M | A | 0.0000 | |
| 35 | L | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | Y | A | -0.3832 | |
| 38 | R | A | -1.2525 | |
| 39 | Q | A | -2.1384 | |
| 40 | A | A | -2.0629 | |
| 41 | P | A | -1.4641 | |
| 42 | G | A | -1.9763 | |
| 43 | K | A | -3.3782 | |
| 44 | E | A | -3.5681 | |
| 45 | R | A | -2.7762 | |
| 46 | E | A | -1.7708 | |
| 47 | W | A | -0.5594 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | A | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | K | A | -2.1003 | |
| 53 | S | A | -2.2033 | |
| 54 | N | A | -2.1598 | |
| 55 | G | A | -1.7063 | |
| 56 | A | A | -0.8279 | |
| 57 | G | A | -0.6695 | |
| 58 | T | A | -0.0636 | |
| 59 | W | A | 0.1272 | |
| 60 | Y | A | -0.5253 | |
| 61 | A | A | -1.1764 | |
| 62 | D | A | -2.3363 | |
| 63 | S | A | -1.7646 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.5281 | |
| 66 | G | A | -1.7809 | |
| 67 | R | A | -1.5303 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -0.8887 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.7588 | |
| 72 | R | A | -1.3820 | |
| 73 | D | A | -1.8416 | |
| 74 | N | A | -2.3351 | |
| 75 | A | A | -1.6178 | |
| 76 | K | A | -2.4513 | |
| 77 | N | A | -1.6486 | |
| 78 | T | A | 0.0000 | |
| 79 | V | A | 0.0000 | |
| 80 | Y | A | -0.7685 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.5899 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.4553 | |
| 85 | S | A | -1.1886 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.2788 | |
| 88 | P | A | -1.9008 | |
| 89 | E | A | -2.3296 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -0.9946 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | -0.7153 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | -0.2586 | |
| 96 | C | A | 0.0000 | |
| 97 | T | A | 0.0000 | |
| 98 | V | A | 0.0000 | |
| 99 | G | A | 0.0024 | |
| 100 | V | A | 1.3366 | |
| 101 | G | A | 0.1436 | |
| 102 | T | A | -0.1242 | |
| 103 | N | A | -0.7501 | |
| 104 | Y | A | -0.0448 | |
| 105 | W | A | 0.1583 | |
| 106 | G | A | -0.2318 | |
| 107 | Q | A | -1.0307 | |
| 108 | G | A | -0.6456 | |
| 109 | T | A | 0.0000 | |
| 110 | Q | A | -1.2282 | |
| 111 | V | A | 0.0000 | |
| 112 | T | A | -0.3271 | |
| 113 | V | A | 0.0000 | |
| 114 | S | A | -0.7492 |