| Chain sequence(s) |
A: GGKGHFF
C: GGKGHFF B: GGKGHFF E: GGKGHFF D: GGKGHFF G: GGKGHFF F: GGKGHFF I: GGKGHFF H: GGKGHFF K: GGKGHFF J: GGKGHFF L: GGKGHFF input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:05:12)
[INFO] Main: Simulation completed successfully. (00:05:15)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -1.7686 | |
| 2 | G | A | -3.0555 | |
| 3 | K | A | -3.0699 | |
| 4 | G | A | -2.2356 | |
| 5 | H | A | -0.7903 | |
| 6 | F | A | 1.2549 | |
| 7 | F | A | 1.7938 | |
| 1 | G | B | -2.1367 | |
| 2 | G | B | -3.0912 | |
| 3 | K | B | -3.6342 | |
| 4 | G | B | -2.5036 | |
| 5 | H | B | -0.8428 | |
| 6 | F | B | 0.7516 | |
| 7 | F | B | 0.0000 | |
| 1 | G | C | -2.3733 | |
| 2 | G | C | -2.6523 | |
| 3 | K | C | -3.7428 | |
| 4 | G | C | -2.3699 | |
| 5 | H | C | 0.0000 | |
| 6 | F | C | 0.7793 | |
| 7 | F | C | 0.0000 | |
| 1 | G | D | -1.6101 | |
| 2 | G | D | -2.0133 | |
| 3 | K | D | -2.6489 | |
| 4 | G | D | 0.0000 | |
| 5 | H | D | 0.0552 | |
| 6 | F | D | 1.7345 | |
| 7 | F | D | 2.0218 | |
| 1 | G | E | -1.4579 | |
| 2 | G | E | -2.0943 | |
| 3 | K | E | -2.8745 | |
| 4 | G | E | -1.7568 | |
| 5 | H | E | -0.8950 | |
| 6 | F | E | 0.8448 | |
| 7 | F | E | 1.4611 | |
| 1 | G | F | -1.7679 | |
| 2 | G | F | -2.5349 | |
| 3 | K | F | -2.8820 | |
| 4 | G | F | -1.9557 | |
| 5 | H | F | -1.1968 | |
| 6 | F | F | 0.0000 | |
| 7 | F | F | 0.0000 | |
| 1 | G | G | -1.5134 | |
| 2 | G | G | -1.8508 | |
| 3 | K | G | -2.8615 | |
| 4 | G | G | -1.4976 | |
| 5 | H | G | 0.0000 | |
| 6 | F | G | 0.2884 | |
| 7 | F | G | 0.0000 | |
| 1 | G | H | -1.1533 | |
| 2 | G | H | -1.8402 | |
| 3 | K | H | -2.4193 | |
| 4 | G | H | -2.2522 | |
| 5 | H | H | -1.7288 | |
| 6 | F | H | 0.2959 | |
| 7 | F | H | 0.0000 | |
| 1 | G | I | -1.1998 | |
| 2 | G | I | -2.1700 | |
| 3 | K | I | -2.7852 | |
| 4 | G | I | -1.9317 | |
| 5 | H | I | -1.2902 | |
| 6 | F | I | 0.2892 | |
| 7 | F | I | 1.2752 | |
| 1 | G | J | -1.2603 | |
| 2 | G | J | -1.8548 | |
| 3 | K | J | -2.5950 | |
| 4 | G | J | 0.0000 | |
| 5 | H | J | -0.5496 | |
| 6 | F | J | 0.9965 | |
| 7 | F | J | 1.9985 | |
| 1 | G | K | -1.4330 | |
| 2 | G | K | -2.2083 | |
| 3 | K | K | -2.5873 | |
| 4 | G | K | -1.1722 | |
| 5 | H | K | 0.2198 | |
| 6 | F | K | 1.4025 | |
| 7 | F | K | 0.0000 | |
| 1 | G | L | -1.3474 | |
| 2 | G | L | -1.9235 | |
| 3 | K | L | -2.6829 | |
| 4 | G | L | -1.8766 | |
| 5 | H | L | -0.4459 | |
| 6 | F | L | 0.7009 | |
| 7 | F | L | 2.3222 |