Project name: GGKGHFF12

Status: done

Started: 2026-02-23 07:32:38
Settings
Chain sequence(s) A: GGKGHFF
C: GGKGHFF
B: GGKGHFF
E: GGKGHFF
D: GGKGHFF
G: GGKGHFF
F: GGKGHFF
I: GGKGHFF
H: GGKGHFF
K: GGKGHFF
J: GGKGHFF
L: GGKGHFF
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:05:12)
[INFO]       Main:     Simulation completed successfully.                                          (00:05:15)
Show buried residues

Minimal score value
-3.7428
Maximal score value
2.3222
Average score
-1.0464
Total score value
-87.8995

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -1.7686
2 G A -3.0555
3 K A -3.0699
4 G A -2.2356
5 H A -0.7903
6 F A 1.2549
7 F A 1.7938
1 G B -2.1367
2 G B -3.0912
3 K B -3.6342
4 G B -2.5036
5 H B -0.8428
6 F B 0.7516
7 F B 0.0000
1 G C -2.3733
2 G C -2.6523
3 K C -3.7428
4 G C -2.3699
5 H C 0.0000
6 F C 0.7793
7 F C 0.0000
1 G D -1.6101
2 G D -2.0133
3 K D -2.6489
4 G D 0.0000
5 H D 0.0552
6 F D 1.7345
7 F D 2.0218
1 G E -1.4579
2 G E -2.0943
3 K E -2.8745
4 G E -1.7568
5 H E -0.8950
6 F E 0.8448
7 F E 1.4611
1 G F -1.7679
2 G F -2.5349
3 K F -2.8820
4 G F -1.9557
5 H F -1.1968
6 F F 0.0000
7 F F 0.0000
1 G G -1.5134
2 G G -1.8508
3 K G -2.8615
4 G G -1.4976
5 H G 0.0000
6 F G 0.2884
7 F G 0.0000
1 G H -1.1533
2 G H -1.8402
3 K H -2.4193
4 G H -2.2522
5 H H -1.7288
6 F H 0.2959
7 F H 0.0000
1 G I -1.1998
2 G I -2.1700
3 K I -2.7852
4 G I -1.9317
5 H I -1.2902
6 F I 0.2892
7 F I 1.2752
1 G J -1.2603
2 G J -1.8548
3 K J -2.5950
4 G J 0.0000
5 H J -0.5496
6 F J 0.9965
7 F J 1.9985
1 G K -1.4330
2 G K -2.2083
3 K K -2.5873
4 G K -1.1722
5 H K 0.2198
6 F K 1.4025
7 F K 0.0000
1 G L -1.3474
2 G L -1.9235
3 K L -2.6829
4 G L -1.8766
5 H L -0.4459
6 F L 0.7009
7 F L 2.3222
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Laboratory of Theory of Biopolymers 2018