| Chain sequence(s) |
A: FGGHKGF
C: FGGHKGF B: FGGHKGF E: FGGHKGF D: FGGHKGF G: FGGHKGF F: FGGHKGF I: FGGHKGF H: FGGHKGF K: FGGHKGF J: FGGHKGF L: FGGHKGF input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:03:10)
[INFO] Main: Simulation completed successfully. (00:03:13)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 2.8780 | |
| 2 | G | A | 0.9351 | |
| 3 | G | A | -0.8344 | |
| 4 | H | A | -2.2452 | |
| 5 | K | A | -1.9687 | |
| 6 | G | A | 0.4787 | |
| 7 | F | A | 2.4187 | |
| 1 | F | B | 3.1341 | |
| 2 | G | B | 1.0108 | |
| 3 | G | B | -0.7912 | |
| 4 | H | B | -2.0604 | |
| 5 | K | B | -1.8386 | |
| 6 | G | B | 0.0000 | |
| 7 | F | B | 2.5839 | |
| 1 | F | C | 3.9466 | |
| 2 | G | C | 1.8199 | |
| 3 | G | C | -0.1191 | |
| 4 | H | C | 0.0000 | |
| 5 | K | C | -1.2439 | |
| 6 | G | C | 0.0000 | |
| 7 | F | C | 1.9628 | |
| 1 | F | D | 4.1938 | |
| 2 | G | D | 1.9552 | |
| 3 | G | D | 0.1091 | |
| 4 | H | D | 0.0000 | |
| 5 | K | D | -1.2036 | |
| 6 | G | D | 0.0000 | |
| 7 | F | D | 1.8330 | |
| 1 | F | E | 4.2917 | |
| 2 | G | E | 2.0134 | |
| 3 | G | E | 0.0879 | |
| 4 | H | E | 0.0000 | |
| 5 | K | E | -1.1886 | |
| 6 | G | E | 0.0000 | |
| 7 | F | E | 1.8677 | |
| 1 | F | F | 4.0389 | |
| 2 | G | F | 1.7092 | |
| 3 | G | F | -0.4952 | |
| 4 | H | F | 0.0000 | |
| 5 | K | F | -1.7141 | |
| 6 | G | F | 0.0000 | |
| 7 | F | F | 1.7118 | |
| 1 | F | G | 3.1039 | |
| 2 | G | G | 0.8188 | |
| 3 | G | G | -0.9510 | |
| 4 | H | G | -2.4953 | |
| 5 | K | G | -2.1945 | |
| 6 | G | G | -0.0520 | |
| 7 | F | G | 1.8827 | |
| 1 | F | H | 2.8140 | |
| 2 | G | H | 0.6973 | |
| 3 | G | H | -0.9032 | |
| 4 | H | H | -2.1992 | |
| 5 | K | H | -1.8220 | |
| 6 | G | H | 0.7178 | |
| 7 | F | H | 2.6291 | |
| 1 | F | I | 2.7059 | |
| 2 | G | I | 1.0915 | |
| 3 | G | I | -0.3789 | |
| 4 | H | I | 0.0000 | |
| 5 | K | I | -1.1411 | |
| 6 | G | I | 0.0000 | |
| 7 | F | I | 2.9998 | |
| 1 | F | J | 2.6762 | |
| 2 | G | J | 0.9872 | |
| 3 | G | J | -0.2915 | |
| 4 | H | J | 0.0000 | |
| 5 | K | J | -0.9158 | |
| 6 | G | J | 0.0000 | |
| 7 | F | J | 3.0877 | |
| 1 | F | K | 2.9345 | |
| 2 | G | K | 1.1204 | |
| 3 | G | K | -0.2067 | |
| 4 | H | K | 0.0000 | |
| 5 | K | K | -0.8873 | |
| 6 | G | K | 0.0000 | |
| 7 | F | K | 3.0968 | |
| 1 | F | L | 3.4361 | |
| 2 | G | L | 1.3852 | |
| 3 | G | L | -0.5258 | |
| 4 | H | L | 0.0000 | |
| 5 | K | L | -1.3103 | |
| 6 | G | L | 0.0000 | |
| 7 | F | L | 2.5375 |