Project name: protein 7

Status: done

Started: 2025-07-18 12:43:29
Settings
Chain sequence(s) A: MPNIFPKNLDEGEVRSFNHRQRFRDILCENQLRFYKRLDELQCEEGLDDIMLDRLAKPNSSNLAAARDKHAKVDVFRILSSVSVDTAMQVAAITNLGAAGGNLTKAYNPRG
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:07)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:07)
Show buried residues

Minimal score value
-3.6234
Maximal score value
1.8292
Average score
-1.3842
Total score value
-153.6423

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.8783
2 P A 0.5813
3 N A 0.1193
4 I A 1.8292
5 F A 1.0394
6 P A -0.6367
7 K A -2.0995
8 N A -2.5711
9 L A -2.3114
10 D A -3.6234
11 E A -3.4728
12 G A -2.6529
13 E A -2.6846
14 V A -2.4059
15 R A -3.3899
16 S A -2.4661
17 F A -2.2086
18 N A -2.7891
19 H A -3.2690
20 R A -3.2789
21 Q A -3.0688
22 R A -2.9282
23 F A -1.2518
24 R A -2.6525
25 D A -2.6351
26 I A -0.4495
27 L A -0.5983
28 C A -0.4958
29 E A -0.9455
30 N A 0.0000
31 Q A -0.3117
32 L A 0.1531
33 R A -1.8754
34 F A 0.0000
35 Y A -1.0830
36 K A -2.6989
37 R A -2.6257
38 L A 0.0000
39 D A -2.9545
40 E A -3.6170
41 L A 0.0000
42 Q A -3.1311
43 C A -1.9695
44 E A -3.2098
45 E A -3.2828
46 G A -2.6590
47 L A 0.0000
48 D A -2.8451
49 D A -2.6256
50 I A -0.9111
51 M A 0.0000
52 L A -1.9305
53 D A -2.6836
54 R A -2.2079
55 L A 0.0000
56 A A -1.4564
57 K A -2.6859
58 P A 0.0000
59 N A -1.8415
60 S A -1.1619
61 S A -0.9703
62 N A -1.6790
63 L A 0.0000
64 A A -1.1525
65 A A -1.5073
66 A A 0.0000
67 R A -2.2032
68 D A -2.8681
69 K A -2.4847
70 H A -2.3115
71 A A -2.0776
72 K A -2.4919
73 V A -2.1901
74 D A -2.2027
75 V A 0.0000
76 F A -0.2758
77 R A -1.6354
78 I A 0.0000
79 L A 0.0000
80 S A -0.4369
81 S A -0.4891
82 V A 0.0000
83 S A -0.4031
84 V A -0.0267
85 D A -1.1216
86 T A 0.0000
87 A A 0.0000
88 M A -0.2395
89 Q A 0.1458
90 V A 0.0000
91 A A 0.0000
92 A A -0.2040
93 I A 0.4596
94 T A 0.0000
95 N A -1.5233
96 L A 0.0000
97 G A -1.0994
98 A A -0.9939
99 A A -1.2363
100 G A 0.0000
101 G A -1.5587
102 N A -2.1982
103 L A 0.0000
104 T A -1.6779
105 K A -2.9568
106 A A -1.5140
107 Y A -1.2941
108 N A -2.2770
109 P A -2.1430
110 R A -2.7429
111 G A -2.0085
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Laboratory of Theory of Biopolymers 2018