Project name: query_structure

Status: done

Started: 2026-03-16 23:44:34
Settings
Chain sequence(s) A: GLPVCGETCVGGTCNTPGCTCSWPVCTRN
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:02)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:02)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:02)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:02)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:10)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:11)
Show buried residues

Minimal score value
-2.2955
Maximal score value
1.7824
Average score
-0.034
Total score value
-0.9864

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A 0.4457
2 L A 1.5922
3 P A 0.6520
4 V A 1.2841
5 C A 0.0000
6 G A -0.3235
7 E A -0.2096
8 T A 0.4659
9 C A 0.0000
10 V A 1.7824
11 G A 0.4283
12 G A 0.2256
13 T A -0.0522
14 C A -0.4993
15 N A -1.4325
16 T A -0.9753
17 P A -0.9989
18 G A -1.2996
19 C A -1.2326
20 T A -0.7880
21 C A 0.2363
22 S A 0.6593
23 W A 1.6634
24 P A 1.3503
25 V A 1.1721
26 C A 0.0000
27 T A -0.7960
28 R A -2.2955
29 N A -2.0410
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018