| Chain sequence(s) |
A: GLPVCGETCVGGTCNTPGCTCSWPVCTRN
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:02)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:02)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:02)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:02)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:02)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:10)
[INFO] Main: Simulation completed successfully. (00:00:11)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | 0.4457 | |
| 2 | L | A | 1.5922 | |
| 3 | P | A | 0.6520 | |
| 4 | V | A | 1.2841 | |
| 5 | C | A | 0.0000 | |
| 6 | G | A | -0.3235 | |
| 7 | E | A | -0.2096 | |
| 8 | T | A | 0.4659 | |
| 9 | C | A | 0.0000 | |
| 10 | V | A | 1.7824 | |
| 11 | G | A | 0.4283 | |
| 12 | G | A | 0.2256 | |
| 13 | T | A | -0.0522 | |
| 14 | C | A | -0.4993 | |
| 15 | N | A | -1.4325 | |
| 16 | T | A | -0.9753 | |
| 17 | P | A | -0.9989 | |
| 18 | G | A | -1.2996 | |
| 19 | C | A | -1.2326 | |
| 20 | T | A | -0.7880 | |
| 21 | C | A | 0.2363 | |
| 22 | S | A | 0.6593 | |
| 23 | W | A | 1.6634 | |
| 24 | P | A | 1.3503 | |
| 25 | V | A | 1.1721 | |
| 26 | C | A | 0.0000 | |
| 27 | T | A | -0.7960 | |
| 28 | R | A | -2.2955 | |
| 29 | N | A | -2.0410 |