| Chain sequence(s) |
A: EDEDEDEDEDED
C: EDEDEDEDEDED B: EDEDEDEDEDED E: EDEDEDEDEDED D: EDEDEDEDEDED G: EDEDEDEDEDED F: EDEDEDEDEDED H: EDEDEDEDEDED input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,H |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:33)
[INFO] Main: Simulation completed successfully. (00:02:35)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | E | A | -7.6098 | |
| 2 | D | A | -8.1064 | |
| 3 | E | A | -7.7495 | |
| 4 | D | A | -7.3984 | |
| 5 | E | A | -5.3010 | |
| 6 | D | A | -5.0245 | |
| 7 | E | A | -4.7463 | |
| 8 | D | A | -5.1330 | |
| 9 | E | A | -4.8317 | |
| 10 | D | A | -5.4211 | |
| 11 | E | A | -4.2578 | |
| 12 | D | A | -3.5755 | |
| 1 | E | B | -5.4144 | |
| 2 | D | B | -7.3379 | |
| 3 | E | B | -7.7101 | |
| 4 | D | B | -7.1786 | |
| 5 | E | B | -6.9500 | |
| 6 | D | B | -6.0743 | |
| 7 | E | B | -5.7070 | |
| 8 | D | B | -4.9811 | |
| 9 | E | B | -5.0118 | |
| 10 | D | B | -4.7696 | |
| 11 | E | B | -4.3137 | |
| 12 | D | B | -3.3958 | |
| 1 | E | C | -3.4719 | |
| 2 | D | C | -4.2616 | |
| 3 | E | C | -4.8106 | |
| 4 | D | C | -4.9265 | |
| 5 | E | C | -4.8802 | |
| 6 | D | C | -5.2657 | |
| 7 | E | C | -5.4769 | |
| 8 | D | C | -6.3216 | |
| 9 | E | C | -6.3635 | |
| 10 | D | C | -5.1721 | |
| 11 | E | C | -4.4819 | |
| 12 | D | C | -5.6782 | |
| 1 | E | D | -4.7040 | |
| 2 | D | D | -5.5997 | |
| 3 | E | D | -7.3706 | |
| 4 | D | D | -6.6058 | |
| 5 | E | D | -7.0302 | |
| 6 | D | D | -6.1304 | |
| 7 | E | D | -6.9412 | |
| 8 | D | D | -5.7267 | |
| 9 | E | D | -6.3677 | |
| 10 | D | D | -5.5804 | |
| 11 | E | D | -5.0851 | |
| 12 | D | D | -3.7215 | |
| 1 | E | E | -4.9941 | |
| 2 | D | E | -7.0681 | |
| 3 | E | E | -6.2285 | |
| 4 | D | E | -7.0087 | |
| 5 | E | E | -5.7885 | |
| 6 | D | E | -6.3111 | |
| 7 | E | E | -5.4641 | |
| 8 | D | E | -6.6414 | |
| 9 | E | E | -5.4105 | |
| 10 | D | E | -5.7013 | |
| 11 | E | E | -4.3986 | |
| 12 | D | E | -3.6198 | |
| 1 | E | F | -5.3169 | |
| 2 | D | F | -5.7962 | |
| 3 | E | F | -6.2435 | |
| 4 | D | F | -5.9439 | |
| 5 | E | F | -6.3176 | |
| 6 | D | F | -5.6941 | |
| 7 | E | F | -5.7788 | |
| 8 | D | F | -5.2178 | |
| 9 | E | F | -5.7569 | |
| 10 | D | F | -4.5907 | |
| 11 | E | F | -4.4191 | |
| 12 | D | F | -3.1850 | |
| 1 | E | G | -5.9570 | |
| 2 | D | G | -6.3408 | |
| 3 | E | G | -5.9333 | |
| 4 | D | G | -5.7272 | |
| 5 | E | G | -5.3752 | |
| 6 | D | G | -5.7443 | |
| 7 | E | G | -5.6292 | |
| 8 | D | G | -6.4731 | |
| 9 | E | G | -6.3780 | |
| 10 | D | G | -5.9759 | |
| 11 | E | G | -4.9224 | |
| 12 | D | G | -4.8755 | |
| 1 | E | H | -3.5384 | |
| 2 | D | H | -4.3692 | |
| 3 | E | H | -4.8990 | |
| 4 | D | H | -5.0427 | |
| 5 | E | H | -5.0111 | |
| 6 | D | H | -4.9555 | |
| 7 | E | H | -4.9916 | |
| 8 | D | H | -4.9420 | |
| 9 | E | H | -4.9742 | |
| 10 | D | H | -4.7490 | |
| 11 | E | H | -4.2118 | |
| 12 | D | H | -3.3776 |