Project name: Acidic peptide_8

Status: done

Started: 2026-06-25 07:00:10
Settings
Chain sequence(s) A: EDEDEDEDEDED
C: EDEDEDEDEDED
B: EDEDEDEDEDED
E: EDEDEDEDEDED
D: EDEDEDEDEDED
G: EDEDEDEDEDED
F: EDEDEDEDEDED
H: EDEDEDEDEDED
input PDB
Selected Chain(s) A,C,B,E,D,G,F,H
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:33)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:35)
Show buried residues

Minimal score value
-8.1064
Maximal score value
-3.185
Average score
-5.4923
Total score value
-527.2625

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E A -7.6098
2 D A -8.1064
3 E A -7.7495
4 D A -7.3984
5 E A -5.3010
6 D A -5.0245
7 E A -4.7463
8 D A -5.1330
9 E A -4.8317
10 D A -5.4211
11 E A -4.2578
12 D A -3.5755
1 E B -5.4144
2 D B -7.3379
3 E B -7.7101
4 D B -7.1786
5 E B -6.9500
6 D B -6.0743
7 E B -5.7070
8 D B -4.9811
9 E B -5.0118
10 D B -4.7696
11 E B -4.3137
12 D B -3.3958
1 E C -3.4719
2 D C -4.2616
3 E C -4.8106
4 D C -4.9265
5 E C -4.8802
6 D C -5.2657
7 E C -5.4769
8 D C -6.3216
9 E C -6.3635
10 D C -5.1721
11 E C -4.4819
12 D C -5.6782
1 E D -4.7040
2 D D -5.5997
3 E D -7.3706
4 D D -6.6058
5 E D -7.0302
6 D D -6.1304
7 E D -6.9412
8 D D -5.7267
9 E D -6.3677
10 D D -5.5804
11 E D -5.0851
12 D D -3.7215
1 E E -4.9941
2 D E -7.0681
3 E E -6.2285
4 D E -7.0087
5 E E -5.7885
6 D E -6.3111
7 E E -5.4641
8 D E -6.6414
9 E E -5.4105
10 D E -5.7013
11 E E -4.3986
12 D E -3.6198
1 E F -5.3169
2 D F -5.7962
3 E F -6.2435
4 D F -5.9439
5 E F -6.3176
6 D F -5.6941
7 E F -5.7788
8 D F -5.2178
9 E F -5.7569
10 D F -4.5907
11 E F -4.4191
12 D F -3.1850
1 E G -5.9570
2 D G -6.3408
3 E G -5.9333
4 D G -5.7272
5 E G -5.3752
6 D G -5.7443
7 E G -5.6292
8 D G -6.4731
9 E G -6.3780
10 D G -5.9759
11 E G -4.9224
12 D G -4.8755
1 E H -3.5384
2 D H -4.3692
3 E H -4.8990
4 D H -5.0427
5 E H -5.0111
6 D H -4.9555
7 E H -4.9916
8 D H -4.9420
9 E H -4.9742
10 D H -4.7490
11 E H -4.2118
12 D H -3.3776
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Laboratory of Theory of Biopolymers 2018