Project name: SVAB38

Status: done

Started: 2024-06-21 06:21:39
Settings
Chain sequence(s) A: DIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYFCQHFDHLPLAFGCGTKVEIKGGGGSGGGGSGGGGSQVQLQESGPGLVKPSETLSLTCTVSGGSVSSGDYAWTWIRQSPGKCLEWIGHIYYSGNTNYNPSLKSRLTISIDTSKTQFSLKLSSVTAADTAIYYCVRDRVTGAFDIWGQGTMVTVS
input PDB
Selected Chain(s) A
Distance of aggregation 5 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:15)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:16)
Show buried residues

Minimal score value
-2.0018
Maximal score value
1.7172
Average score
-0.2536
Total score value
-60.8633

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 D A -1.7894
2 I A 0.0000
3 Q A -1.1983
4 M A 0.0000
5 T A -0.0516
6 Q A 0.0000
7 S A -0.1504
8 P A -0.2090
9 S A -0.2772
10 S A -0.3736
11 L A 0.1663
12 S A -0.3498
13 A A -0.0450
14 S A 0.0868
15 V A 0.7408
16 G A -0.3629
17 D A -1.2156
18 R A -2.0018
19 V A 0.0000
20 T A -0.0545
21 I A 0.0000
22 T A -0.0329
23 C A 0.0000
24 Q A -1.1868
25 A A 0.0000
26 S A -0.4152
27 Q A -1.4773
28 D A -2.0008
29 I A 0.0000
30 S A -0.3147
31 N A -0.8726
32 Y A 0.8991
33 L A 0.0000
34 N A 0.0000
35 W A 0.0000
36 Y A 0.0000
37 Q A 0.0000
38 Q A 0.0000
39 K A -0.2165
40 P A -0.3699
41 G A -0.6421
42 K A -0.7920
43 A A -0.1207
44 P A 0.0000
45 K A -1.1264
46 L A 0.0000
47 L A 0.0000
48 I A 0.0000
49 Y A 0.1586
50 D A -0.7550
51 A A 0.0000
52 S A -0.3137
53 N A -0.4569
54 L A 0.3806
55 E A -0.2053
56 T A -0.2072
57 G A -0.4467
58 V A 0.0638
59 P A -0.1512
60 S A -0.3009
61 R A -0.3898
62 F A 0.0000
63 S A -0.2006
64 G A -0.1573
65 S A -0.2623
66 G A -0.2929
67 S A -0.2622
68 G A -0.3420
69 T A -0.4720
70 D A -1.4784
71 F A 0.0000
72 T A -0.0209
73 F A 0.0000
74 T A -0.0212
75 I A 0.0000
76 S A -0.1983
77 S A -0.3433
78 L A 0.0000
79 Q A -0.4301
80 P A -0.5232
81 E A -1.8366
82 D A 0.0000
83 I A 0.2544
84 A A 0.0000
85 T A -0.2153
86 Y A 0.0000
87 F A 0.0000
88 C A 0.0000
89 Q A 0.0000
90 H A 0.0000
91 F A 0.4362
92 D A -0.8320
93 H A -1.0334
94 L A 0.3234
95 P A 0.1085
96 L A 0.0000
97 A A 0.0128
98 F A 0.0000
99 G A 0.0000
100 C A 0.5667
101 G A 0.0000
102 T A 0.0000
103 K A -1.3725
104 V A 0.0000
105 E A -1.6635
106 I A 0.0000
107 K A -1.7845
108 G A -0.8056
109 G A -0.3371
110 G A -0.4607
111 G A -0.4306
112 S A -0.2914
113 G A -0.2284
114 G A -0.5715
115 G A -0.6383
116 G A -0.5917
117 S A -0.3146
118 G A -0.2988
119 G A -0.5665
120 G A -0.6359
121 G A -0.6078
122 S A -0.4401
123 Q A -0.7764
124 V A -0.0740
125 Q A -0.5711
126 L A 0.0000
127 Q A -0.6183
128 E A 0.0000
129 S A -0.2334
130 G A -0.4816
131 P A -0.3021
132 G A -0.0009
133 L A 1.5023
134 V A 0.0000
135 K A -1.7258
136 P A -0.4850
137 S A -0.5928
138 E A -1.8074
139 T A -0.3617
140 L A 0.0000
141 S A -0.2222
142 L A 0.0000
143 T A -0.0225
144 C A 0.0000
145 T A -0.0659
146 V A 0.0000
147 S A -0.1264
148 G A -0.2661
149 G A -0.5256
150 S A -0.2987
151 V A 0.0000
152 S A -0.0693
153 S A -0.2268
154 G A -0.4108
155 D A -1.7172
156 Y A 0.0838
157 A A 0.1237
158 W A 0.0000
159 T A 0.0000
160 W A 0.0000
161 I A 0.0000
162 R A 0.0000
163 Q A -0.1481
164 S A -0.1033
165 P A -0.3449
166 G A -0.8268
167 K A -1.7445
168 C A -0.0921
169 L A 0.0000
170 E A -0.6255
171 W A 0.0000
172 I A 0.0000
173 G A 0.0000
174 H A -0.1382
175 I A 0.0000
176 Y A 0.4351
177 Y A 0.4193
178 S A -0.1865
179 G A -0.5262
180 N A -1.3246
181 T A -0.3984
182 N A -0.7038
183 Y A 0.1072
184 N A -0.1101
185 P A -0.2563
186 S A -0.2484
187 L A 0.0000
188 K A -1.7383
189 S A -0.5865
190 R A -0.4148
191 L A 0.0000
192 T A -0.0467
193 I A 0.0000
194 S A -0.0859
195 I A 0.2434
196 D A -0.4801
197 T A -0.1987
198 S A -0.5340
199 K A -1.7429
200 T A -0.3838
201 Q A -0.2825
202 F A 0.0000
203 S A -0.0460
204 L A 0.0000
205 K A -1.3241
206 L A 0.0000
207 S A -0.1689
208 S A -0.2637
209 V A 0.0000
210 T A -0.0500
211 A A 0.0581
212 A A 0.0691
213 D A 0.0000
214 T A -0.0129
215 A A 0.0000
216 I A 0.7357
217 Y A 0.0000
218 Y A 0.0000
219 C A 0.0000
220 V A 0.0000
221 R A -0.2283
222 D A 0.0000
223 R A 0.1241
224 V A 1.7172
225 T A 0.2552
226 G A 0.0000
227 A A 0.0000
228 F A 0.0000
229 D A -0.2328
230 I A 0.2469
231 W A 0.1693
232 G A 0.0000
233 Q A -1.2197
234 G A -0.3382
235 T A 0.0610
236 M A 0.6025
237 V A 0.0000
238 T A 0.0090
239 V A 0.1306
240 S A -0.1811
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Laboratory of Theory of Biopolymers 2018