Project name: 146f8c03894f951

Status: done

Started: 2025-06-03 04:59:10
Settings
Chain sequence(s) H: QVQLVQSGAEVKKPGESVKVSCKASGYTFTNYGMNWVKQAPGQGLEWMGWINTYTGEPTYADKFQGRVTMTTDTSTSTAYMEIRNLGGDDTAVYYCARWSWSDGYYVYFDYWGQGTSVTVSS
L: DIVMTQSPDSLTVSLGERTTINCKSSQSVLDSSTNKNSLAWYQQKPGQPPKLLLSWASTRESGIPDRFSGSGSGTDFTLTIDSPQPEDSATYYCQQSAHFPITFGQGTRLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:18)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:19)
Show buried residues

Minimal score value
-2.9963
Maximal score value
0.8748
Average score
-0.6407
Total score value
-150.5582

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.3648
2 V H -0.6410
3 Q H -0.6707
4 L H 0.0000
5 V H 0.2388
6 Q H 0.0000
7 S H -0.5663
8 G H -0.6359
9 A H -0.0497
11 E H 0.0534
12 V H 0.8748
13 K H -0.9207
14 K H -2.3495
15 P H -2.4734
16 G H -2.4494
17 E H -2.5610
18 S H -2.1616
19 V H 0.0000
20 K H -1.4054
21 V H 0.0000
22 S H -0.3971
23 C H 0.0000
24 K H -0.7466
25 A H 0.0000
26 S H -0.6797
27 G H -0.8807
28 Y H -0.4859
29 T H -0.4269
30 F H 0.0000
35 T H -0.1983
36 N H -0.8295
37 Y H -0.0575
38 G H 0.0000
39 M H 0.0000
40 N H 0.0000
41 W H 0.0000
42 V H 0.0000
43 K H 0.0000
44 Q H -0.6225
45 A H -1.0001
46 P H -0.8231
47 G H -1.2130
48 Q H -1.7998
49 G H -1.2676
50 L H 0.0000
51 E H -0.8379
52 W H 0.0000
53 M H 0.0000
54 G H 0.0000
55 W H -0.1498
56 I H 0.0000
57 N H -0.6243
58 T H 0.0000
59 Y H 0.5707
62 T H -0.2126
63 G H -0.8983
64 E H -1.7911
65 P H -0.9928
66 T H -0.5803
67 Y H -0.8210
68 A H 0.0000
69 D H -2.9963
70 K H -2.9875
71 F H 0.0000
72 Q H -2.6660
74 G H -1.9486
75 R H -2.0602
76 V H 0.0000
77 T H -0.6725
78 M H 0.0000
79 T H -0.4598
80 T H -0.4586
81 D H -0.5095
82 T H -0.2043
83 S H -0.4160
84 T H -0.5120
85 S H -0.5773
86 T H 0.0000
87 A H 0.0000
88 Y H -0.2970
89 M H 0.0000
90 E H -1.0004
91 I H 0.0000
92 R H -2.1977
93 N H -2.6681
94 L H 0.0000
95 G H -2.0528
96 G H -1.8333
97 D H -2.1003
98 D H 0.0000
99 T H -0.6646
100 A H 0.0000
101 V H 0.1379
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 W H 0.0000
108 S H 0.1250
109 W H -0.0290
110 S H -0.6495
111 D H -1.5648
111A G H -0.7183
112A Y H 0.2996
112 Y H 0.6246
113 V H 0.0000
114 Y H 0.4683
115 F H 0.0000
116 D H -0.1334
117 Y H 0.1765
118 W H 0.0000
119 G H 0.0000
120 Q H -1.2337
121 G H -0.6487
122 T H 0.0000
123 S H -0.0360
124 V H 0.0000
125 T H -0.1504
126 V H 0.0000
127 S H -0.7431
128 S H -0.7792
1 D L -1.4177
2 I L 0.0000
3 V L 0.8117
4 M L 0.0000
5 T L -0.5838
6 Q L 0.0000
7 S L -1.0542
8 P L -1.2645
9 D L -2.3080
10 S L -1.3740
11 L L -0.5186
12 T L -0.4961
13 V L 0.0000
14 S L -0.9892
15 L L -0.5188
16 G L -1.2404
17 E L -2.2901
18 R L -2.8089
19 T L 0.0000
20 T L -0.6343
21 I L 0.0000
22 N L -1.2228
23 C L 0.0000
24 K L -1.6087
25 S L 0.0000
26 S L -0.8312
27 Q L -1.5387
28 S L -1.1515
29 V L 0.0000
30 L L -0.5520
31 D L -1.0487
32 S L -0.9826
33 S L -0.8751
34 T L -1.1241
35 N L -1.7487
36 K L -1.3347
37 N L -0.9082
38 S L 0.0000
39 L L 0.0000
40 A L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L -1.2484
45 K L -1.5043
46 P L -0.9590
47 G L -1.2951
48 Q L -1.8862
49 P L -1.3604
50 P L 0.0000
51 K L -1.8433
52 L L 0.0000
53 L L 0.0000
54 L L 0.0000
55 S L 0.0000
56 W L -0.3774
57 A L 0.0000
65 S L -0.6895
66 T L -0.6225
67 R L -1.4014
68 E L -1.3963
69 S L -0.8152
70 G L -1.0274
71 I L 0.0000
72 P L -1.3607
74 D L -2.3432
75 R L -1.8770
76 F L 0.0000
77 S L -0.9930
78 G L -0.5030
79 S L -0.7749
80 G L -1.2178
83 S L -1.1156
84 G L -1.1713
85 T L -1.5949
86 D L -2.5582
87 F L 0.0000
88 T L -0.8863
89 L L 0.0000
90 T L 0.0000
91 I L 0.0000
92 D L -2.5029
93 S L -1.7467
94 P L 0.0000
95 Q L -1.2739
96 P L -1.0986
97 E L -1.9365
98 D L 0.0000
99 S L -0.9840
100 A L 0.0000
101 T L -1.0594
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 S L 0.2292
108 A L -0.2392
109 H L -0.6151
114 F L 0.1625
115 P L -0.5565
116 I L 0.0000
117 T L -0.0703
118 F L 0.0000
119 G L 0.0000
120 Q L -1.3915
121 G L 0.0000
122 T L 0.0000
123 R L -1.8083
124 L L 0.0000
125 E L -0.5930
126 I L -0.3540
127 K L -1.2987
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018