Project name: pep1

Status: done

Started: 2026-02-25 03:39:20
Settings
Chain sequence(s) A: MARTKQTARKSTGGKAPRKQLATKVVVRFQLGSILRRGC
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:23)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:23)
Show buried residues

Minimal score value
-3.128
Maximal score value
2.1143
Average score
-0.9288
Total score value
-36.2235

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.5331
2 A A -0.6839
3 R A -2.3100
4 T A -1.9711
5 K A -2.8873
6 Q A -2.7078
7 T A -2.1225
8 A A -2.1669
9 R A -3.0004
10 K A -2.8819
11 S A -2.1319
12 T A -1.8151
13 G A -1.8178
14 G A -1.7773
15 K A -2.7272
16 A A -2.5012
17 P A -2.1815
18 R A -2.9673
19 K A -3.1280
20 Q A -1.9559
21 L A -0.1422
22 A A -0.4036
23 T A -0.1809
24 K A -0.3161
25 V A 1.2214
26 V A 2.1143
27 V A 1.1609
28 R A 0.0305
29 F A 2.0134
30 Q A 0.8244
31 L A 1.1614
32 G A 0.6235
33 S A 0.1228
34 I A 1.1063
35 L A 1.0711
36 R A -1.4836
37 R A -1.6259
38 G A -0.4338
39 C A 0.1145
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Laboratory of Theory of Biopolymers 2018