Project name: query_structure

Status: done

Started: 2026-03-16 23:48:05
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Chain sequence(s) A: HVQLVESGGGLVQAGGFLRLSCTASGFTFDNLALAWFRQAPGKEREGVSCISWSGTRTYYADSVQGRFAISRDNAKNTLYLQMASLKPEDTAMYYCAAESSWVKTCPGDTTDWGSTYWGQGTQVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:14)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:14)
Show buried residues

Minimal score value
-3.9412
Maximal score value
1.5006
Average score
-0.7268
Total score value
-93.0304

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 H A -0.5427
2 V A 0.8355
3 Q A -0.2694
4 L A 0.0000
5 V A 0.2873
6 E A 0.0000
7 S A -0.6642
8 G A -0.9813
9 G A -0.7972
10 G A -0.0534
11 L A 1.0390
12 V A 0.3328
13 Q A -1.0141
14 A A -1.2728
15 G A -0.9290
16 G A 0.0891
17 F A 0.9534
18 L A 0.0071
19 R A -1.5071
20 L A 0.0000
21 S A -0.5203
22 C A 0.0000
23 T A -0.5052
24 A A -0.2168
25 S A -0.1546
26 G A -0.1537
27 F A -0.0991
28 T A -1.0851
29 F A 0.0000
30 D A -2.3310
31 N A -1.4696
32 L A 0.0000
33 A A 0.0000
34 L A 0.0000
35 A A 0.0000
36 W A 0.0000
37 F A -0.5288
38 R A -1.5717
39 Q A -2.5274
40 A A -2.2426
41 P A -1.5458
42 G A -2.0567
43 K A -3.5463
44 E A -3.9412
45 R A -3.4738
46 E A -2.2512
47 G A -0.9837
48 V A 0.0000
49 S A 0.0000
50 C A 0.0000
51 I A 0.0000
52 S A -0.5335
53 W A -0.5713
54 S A -0.9552
55 G A -1.0419
56 T A -1.0592
57 R A -1.9846
58 T A -0.7169
59 Y A -0.3363
60 Y A -0.5684
61 A A 0.0000
62 D A -2.2685
63 S A -1.6798
64 V A 0.0000
65 Q A -2.0518
66 G A -1.4453
67 R A -1.0231
68 F A 0.0000
69 A A -0.6516
70 I A 0.0000
71 S A -0.5588
72 R A -1.0067
73 D A -1.6935
74 N A -2.4995
75 A A -1.7776
76 K A -2.3534
77 N A -1.9565
78 T A -1.1348
79 L A 0.0000
80 Y A -0.5876
81 L A 0.0000
82 Q A -0.9321
83 M A 0.0000
84 A A -0.2465
85 S A -0.6060
86 L A 0.0000
87 K A -2.5918
88 P A -2.0236
89 E A -2.4161
90 D A 0.0000
91 T A -1.0360
92 A A 0.0000
93 M A -0.8129
94 Y A 0.0000
95 Y A -0.4305
96 C A 0.0000
97 A A 0.0000
98 A A 0.0000
99 E A 0.0000
100 S A -0.0854
101 S A 0.4430
102 W A 1.5006
103 V A 1.4578
104 K A -0.7906
105 T A -0.5790
106 C A -0.7127
107 P A -1.4002
108 G A -1.4727
109 D A -2.2735
110 T A -1.4382
111 T A -1.4653
112 D A -2.1403
113 W A -0.9154
114 G A -1.0635
115 S A -0.4972
116 T A -0.0292
117 Y A 0.6428
118 W A 0.3077
119 G A -0.2589
120 Q A -0.9746
121 G A 0.0000
122 T A -0.8858
123 Q A -1.1200
124 V A 0.0000
125 T A -0.3251
126 V A 0.0000
127 S A -0.8086
128 S A -0.9032
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Laboratory of Theory of Biopolymers 2018