| Chain sequence(s) |
A: HVQLVESGGGLVQAGGFLRLSCTASGFTFDNLALAWFRQAPGKEREGVSCISWSGTRTYYADSVQGRFAISRDNAKNTLYLQMASLKPEDTAMYYCAAESSWVKTCPGDTTDWGSTYWGQGTQVTVSS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:14)
[INFO] Main: Simulation completed successfully. (00:01:14)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | H | A | -0.5427 | |
| 2 | V | A | 0.8355 | |
| 3 | Q | A | -0.2694 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.2873 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.6642 | |
| 8 | G | A | -0.9813 | |
| 9 | G | A | -0.7972 | |
| 10 | G | A | -0.0534 | |
| 11 | L | A | 1.0390 | |
| 12 | V | A | 0.3328 | |
| 13 | Q | A | -1.0141 | |
| 14 | A | A | -1.2728 | |
| 15 | G | A | -0.9290 | |
| 16 | G | A | 0.0891 | |
| 17 | F | A | 0.9534 | |
| 18 | L | A | 0.0071 | |
| 19 | R | A | -1.5071 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.5203 | |
| 22 | C | A | 0.0000 | |
| 23 | T | A | -0.5052 | |
| 24 | A | A | -0.2168 | |
| 25 | S | A | -0.1546 | |
| 26 | G | A | -0.1537 | |
| 27 | F | A | -0.0991 | |
| 28 | T | A | -1.0851 | |
| 29 | F | A | 0.0000 | |
| 30 | D | A | -2.3310 | |
| 31 | N | A | -1.4696 | |
| 32 | L | A | 0.0000 | |
| 33 | A | A | 0.0000 | |
| 34 | L | A | 0.0000 | |
| 35 | A | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | F | A | -0.5288 | |
| 38 | R | A | -1.5717 | |
| 39 | Q | A | -2.5274 | |
| 40 | A | A | -2.2426 | |
| 41 | P | A | -1.5458 | |
| 42 | G | A | -2.0567 | |
| 43 | K | A | -3.5463 | |
| 44 | E | A | -3.9412 | |
| 45 | R | A | -3.4738 | |
| 46 | E | A | -2.2512 | |
| 47 | G | A | -0.9837 | |
| 48 | V | A | 0.0000 | |
| 49 | S | A | 0.0000 | |
| 50 | C | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | S | A | -0.5335 | |
| 53 | W | A | -0.5713 | |
| 54 | S | A | -0.9552 | |
| 55 | G | A | -1.0419 | |
| 56 | T | A | -1.0592 | |
| 57 | R | A | -1.9846 | |
| 58 | T | A | -0.7169 | |
| 59 | Y | A | -0.3363 | |
| 60 | Y | A | -0.5684 | |
| 61 | A | A | 0.0000 | |
| 62 | D | A | -2.2685 | |
| 63 | S | A | -1.6798 | |
| 64 | V | A | 0.0000 | |
| 65 | Q | A | -2.0518 | |
| 66 | G | A | -1.4453 | |
| 67 | R | A | -1.0231 | |
| 68 | F | A | 0.0000 | |
| 69 | A | A | -0.6516 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.5588 | |
| 72 | R | A | -1.0067 | |
| 73 | D | A | -1.6935 | |
| 74 | N | A | -2.4995 | |
| 75 | A | A | -1.7776 | |
| 76 | K | A | -2.3534 | |
| 77 | N | A | -1.9565 | |
| 78 | T | A | -1.1348 | |
| 79 | L | A | 0.0000 | |
| 80 | Y | A | -0.5876 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -0.9321 | |
| 83 | M | A | 0.0000 | |
| 84 | A | A | -0.2465 | |
| 85 | S | A | -0.6060 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.5918 | |
| 88 | P | A | -2.0236 | |
| 89 | E | A | -2.4161 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -1.0360 | |
| 92 | A | A | 0.0000 | |
| 93 | M | A | -0.8129 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | -0.4305 | |
| 96 | C | A | 0.0000 | |
| 97 | A | A | 0.0000 | |
| 98 | A | A | 0.0000 | |
| 99 | E | A | 0.0000 | |
| 100 | S | A | -0.0854 | |
| 101 | S | A | 0.4430 | |
| 102 | W | A | 1.5006 | |
| 103 | V | A | 1.4578 | |
| 104 | K | A | -0.7906 | |
| 105 | T | A | -0.5790 | |
| 106 | C | A | -0.7127 | |
| 107 | P | A | -1.4002 | |
| 108 | G | A | -1.4727 | |
| 109 | D | A | -2.2735 | |
| 110 | T | A | -1.4382 | |
| 111 | T | A | -1.4653 | |
| 112 | D | A | -2.1403 | |
| 113 | W | A | -0.9154 | |
| 114 | G | A | -1.0635 | |
| 115 | S | A | -0.4972 | |
| 116 | T | A | -0.0292 | |
| 117 | Y | A | 0.6428 | |
| 118 | W | A | 0.3077 | |
| 119 | G | A | -0.2589 | |
| 120 | Q | A | -0.9746 | |
| 121 | G | A | 0.0000 | |
| 122 | T | A | -0.8858 | |
| 123 | Q | A | -1.1200 | |
| 124 | V | A | 0.0000 | |
| 125 | T | A | -0.3251 | |
| 126 | V | A | 0.0000 | |
| 127 | S | A | -0.8086 | |
| 128 | S | A | -0.9032 |