Project name: NIVAbABB

Status: done

Started: 2025-12-25 09:19:56
Settings
Chain sequence(s) H: QVQLKESGPGLVAPSQSLSITCTVSGFSLTNYGVTWVRQPPGKGLEWLGVMWGDGSINYHSALISRVSVSKDNSKSQVFLKLNSLQTDDTATYYCAKHYYGSSYGYYAMDYWGQGTSVTVSS
L: DIVMTQSQKFMSTSVGDRVSVTCKASQNVGTNVAWHQQKPGQSPKALIYSASFRYSGVPDRFTGSGSGTDFTLTISNVQSEDLAEYFCQQYISYPFTFGGGTKLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:44)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:46)
Show buried residues

Minimal score value
-3.0652
Maximal score value
1.7629
Average score
-0.5137
Total score value
-117.6451

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.4199
2 V H -0.9128
3 Q H -1.6051
4 L H 0.0000
5 K H -1.8976
6 E H 0.0000
7 S H -0.8263
8 G H -0.4423
9 P H -0.1461
11 G H 0.2343
12 L H 1.1346
13 V H 0.0000
14 A H -0.4907
15 P H -1.2095
16 S H -1.3727
17 Q H -1.7476
18 S H -1.4304
19 L H 0.0000
20 S H -0.6341
21 I H 0.0000
22 T H -0.4044
23 C H 0.0000
24 T H -0.9912
25 V H 0.0000
26 S H -0.9888
27 G H -0.9274
28 F H -0.4772
29 S H -0.6690
30 L H 0.0000
35 T H -1.4167
36 N H -1.4577
37 Y H -0.5138
38 G H 0.0000
39 V H 0.0000
40 T H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.9801
45 P H -1.3745
46 P H -1.3122
47 G H -1.4807
48 K H -2.2782
49 G H -1.4471
50 L H 0.0000
51 E H -0.8190
52 W H 0.0000
53 L H 0.0000
54 G H 0.0000
55 V H 0.0000
56 M H 0.2171
57 W H -0.4917
58 G H -1.3467
59 D H -1.9330
63 G H -0.8792
64 S H -0.1936
65 I H 0.7822
66 N H 0.4464
67 Y H 0.6228
68 H H 0.2207
69 S H 0.4594
70 A H 0.5516
71 L H 0.0000
72 I H 1.7629
74 S H 0.4919
75 R H -0.2565
76 V H 0.0000
77 S H -0.3280
78 V H 0.0000
79 S H -0.2920
80 K H -1.0278
81 D H -1.7080
82 N H -2.0521
83 S H -1.7540
84 K H -2.4111
85 S H -1.6572
86 Q H -1.3663
87 V H 0.0000
88 F H 0.1338
89 L H 0.0000
90 K H -1.0025
91 L H 0.0000
92 N H -1.5081
93 S H -1.3354
94 L H 0.0000
95 Q H -2.1854
96 T H -1.6195
97 D H -2.2498
98 D H 0.0000
99 T H -0.8446
100 A H 0.0000
101 T H -0.4138
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 K H 0.0000
107 H H 0.3309
108 Y H 0.6416
109 Y H 0.4271
110 G H 0.0381
111 S H -0.1100
111A S H 0.2661
112B Y H 1.0837
112A G H 0.5002
112 Y H 0.8824
113 Y H 0.6787
114 A H 0.0000
115 M H 0.0000
116 D H -0.0330
117 Y H -0.3701
118 W H 0.0000
119 G H 0.0000
120 Q H -2.0470
121 G H -1.2942
122 T H -0.7749
123 S H -0.3721
124 V H 0.0000
125 T H -0.0943
126 V H 0.0000
127 S H -0.1090
128 S H -0.2037
1 D L -1.2880
2 I L 0.1429
3 V L 1.0301
4 M L 0.0000
5 T L -0.5583
6 Q L 0.0000
7 S L -0.8958
8 Q L -0.8113
9 K L -1.3159
10 F L 0.4104
11 M L -0.0048
12 S L -0.5392
13 T L 0.0000
14 S L -1.1926
15 V L -0.3760
16 G L -1.6651
17 D L -2.9369
18 R L -3.0652
19 V L -1.4602
20 S L -0.4308
21 V L 0.0000
22 T L -0.7545
23 C L 0.0000
24 K L -2.0429
25 A L -1.1005
26 S L -0.8832
27 Q L -1.3402
28 N L -1.9508
29 V L 0.0000
36 G L -0.8102
37 T L -0.5044
38 N L -0.0268
39 V L 0.0000
40 A L 0.0000
41 W L 0.0000
42 H L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 K L -1.5416
46 P L -1.1227
47 G L -1.4682
48 Q L -2.1495
49 S L -1.5712
50 P L 0.0000
51 K L -1.4641
52 A L -0.6003
53 L L 0.0000
54 I L 0.0000
55 Y L 0.7679
56 S L 0.4417
57 A L 0.0000
65 S L 0.5014
66 F L 1.5152
67 R L -0.2402
68 Y L 0.1468
69 S L -0.2952
70 G L -0.7895
71 V L -0.9003
72 P L -1.2623
74 D L -2.3118
75 R L -1.8442
76 F L 0.0000
77 T L -0.4723
78 G L 0.0000
79 S L -0.2503
80 G L -1.0225
83 S L -0.9680
84 G L -1.3800
85 T L -1.8716
86 D L -2.1666
87 F L 0.0000
88 T L -0.6621
89 L L 0.0000
90 T L -0.6101
91 I L 0.0000
92 S L -2.2681
93 N L -2.7531
94 V L 0.0000
95 Q L -1.4828
96 S L -1.0910
97 E L -1.7317
98 D L 0.0000
99 L L -0.7113
100 A L 0.0000
101 E L -1.2049
102 Y L 0.0000
103 F L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 Y L 0.0000
108 I L 0.6553
109 S L 0.6877
114 Y L 0.7468
115 P L 0.3258
116 F L 0.0000
117 T L 0.2974
118 F L 0.0000
119 G L 0.0000
120 G L -1.1980
121 G L -1.1439
122 T L 0.0000
123 K L -0.9969
124 L L 0.0000
125 E L -1.2384
126 I L -0.9598
127 K L -1.5852
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Laboratory of Theory of Biopolymers 2018