Project name: 1JSF

Status: done

Started: 2024-11-21 06:54:21
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Chain sequence(s) A: KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:20)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:20)
Show buried residues

Minimal score value
-4.2703
Maximal score value
1.7107
Average score
-1.0046
Total score value
-130.5952

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A -1.8868
2 V A -0.0779
3 F A 0.0000
4 E A -2.1449
5 R A -2.1281
6 C A -1.7897
7 E A -2.0726
8 L A 0.0000
9 A A 0.0000
10 R A -2.8369
11 T A 0.0000
12 L A 0.0000
13 K A -2.6934
14 R A -2.7523
15 L A -1.3861
16 G A -1.4331
17 M A 0.0000
18 D A -2.2738
19 G A -1.7832
20 Y A -1.7378
21 R A -2.7644
22 G A -1.6670
23 I A 0.0000
24 S A -1.3033
25 L A 0.0000
26 A A 0.0000
27 N A -1.2284
28 W A 0.0000
29 M A 0.0000
30 C A 0.0000
31 L A 0.0000
32 A A 0.0000
33 K A -1.2179
34 W A -0.5747
35 E A -0.5377
36 S A -0.7357
37 G A -0.7550
38 Y A 0.0000
39 N A -1.2412
40 T A 0.0000
41 R A -2.3055
42 A A -1.2089
43 T A -0.7319
44 N A -0.3616
45 Y A 0.0586
46 N A -1.1042
47 A A -1.1604
48 G A -1.6305
49 D A -2.6132
50 R A -2.9192
51 S A 0.0000
52 T A 0.0000
53 D A -0.3853
54 Y A 0.0000
55 G A 0.0000
56 I A 0.0000
57 F A 0.0000
58 Q A 0.0000
59 I A 0.0000
60 N A -0.1310
61 S A 0.0000
62 R A -0.2878
63 Y A 1.6190
64 W A 0.4869
65 C A 0.0000
66 N A -1.0528
67 D A -1.5725
68 G A -1.7717
69 K A -2.5560
70 T A 0.0000
71 P A -1.4180
72 G A -0.5664
73 A A 0.2933
74 V A 1.7107
75 N A 0.3391
76 A A 0.2829
77 C A -0.3944
78 H A -0.7888
79 L A -0.6441
80 S A -0.7753
81 C A 0.0000
82 S A -0.6258
83 A A -0.7963
84 L A 0.0000
85 L A -1.6634
86 Q A -2.4767
87 D A -3.1302
88 N A -2.5889
89 I A 0.0000
90 A A -0.8472
91 D A -0.8983
92 A A 0.0000
93 V A 0.0000
94 A A -0.5004
95 C A 0.0000
96 A A 0.0000
97 K A -1.7595
98 R A -2.1007
99 V A 0.0000
100 V A 0.0000
101 R A -3.2843
102 D A -2.7105
103 P A -1.5496
104 Q A -1.5292
105 G A -2.0643
106 I A 0.0000
107 R A -1.7451
108 A A -0.6551
109 W A 0.0000
110 V A 0.3376
111 A A -0.7303
112 W A -1.6090
113 R A -2.8977
114 N A -2.7547
115 R A -2.7108
116 C A 0.0000
117 Q A -3.2531
118 N A -3.3894
119 R A -4.2703
120 D A -3.7457
121 V A -3.0874
122 R A -3.4302
123 Q A -2.8317
124 Y A 0.0000
125 V A 0.0000
126 Q A -2.2599
127 G A -1.2418
128 C A 0.0000
129 G A -0.7160
130 V A -0.4684
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Laboratory of Theory of Biopolymers 2018