| Chain sequence(s) |
A: GTCNTPGCTCDPWPICTRDGLPTCGETCFG
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:08)
[INFO] Main: Simulation completed successfully. (00:00:09)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -0.2402 | |
| 2 | T | A | -0.1763 | |
| 3 | C | A | -0.5222 | |
| 4 | N | A | -1.2366 | |
| 5 | T | A | -1.1392 | |
| 6 | P | A | -0.9278 | |
| 7 | G | A | -1.2977 | |
| 8 | C | A | -1.3963 | |
| 9 | T | A | -1.3793 | |
| 10 | C | A | -0.7169 | |
| 11 | D | A | -2.0759 | |
| 12 | P | A | -1.0180 | |
| 13 | W | A | 0.0145 | |
| 14 | P | A | 0.0854 | |
| 15 | I | A | 0.3423 | |
| 16 | C | A | 0.0000 | |
| 17 | T | A | 0.0000 | |
| 18 | R | A | -2.0523 | |
| 19 | D | A | -2.4165 | |
| 20 | G | A | -1.1771 | |
| 21 | L | A | 0.3603 | |
| 22 | P | A | -0.1232 | |
| 23 | T | A | -0.4051 | |
| 24 | C | A | -0.5959 | |
| 25 | G | A | -0.6168 | |
| 26 | E | A | -0.5728 | |
| 27 | T | A | 0.2113 | |
| 28 | C | A | 0.4415 | |
| 29 | F | A | 1.4346 | |
| 30 | G | A | 0.3255 |