| Chain sequence(s) |
A: QVQLVESGGGLVQAGGSLRLSCAASGFPVEYNTMYWYRQAPGKEREWVATIESWGWFTWYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCEVGVGHNYAGRGTQVTVS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:40)
[INFO] Main: Simulation completed successfully. (00:02:41)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.3758 | |
| 2 | V | A | -0.7818 | |
| 3 | Q | A | -0.7241 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.7716 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.7103 | |
| 8 | G | A | -1.0676 | |
| 9 | G | A | -0.8387 | |
| 10 | G | A | -0.1178 | |
| 11 | L | A | 0.9240 | |
| 12 | V | A | 0.0000 | |
| 13 | Q | A | -1.2645 | |
| 14 | A | A | -1.3994 | |
| 15 | G | A | -1.3191 | |
| 16 | G | A | -0.9027 | |
| 17 | S | A | -1.2361 | |
| 18 | L | A | -1.0713 | |
| 19 | R | A | -2.1729 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.4611 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.1088 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.6328 | |
| 26 | G | A | -1.0609 | |
| 27 | F | A | 0.0000 | |
| 28 | P | A | -0.5394 | |
| 29 | V | A | 0.0000 | |
| 30 | E | A | -0.0466 | |
| 31 | Y | A | 1.0578 | |
| 32 | N | A | 0.5651 | |
| 33 | T | A | 0.5720 | |
| 34 | M | A | 0.0000 | |
| 35 | Y | A | 0.2937 | |
| 36 | W | A | 0.0000 | |
| 37 | Y | A | -0.0875 | |
| 38 | R | A | 0.0000 | |
| 39 | Q | A | -1.9859 | |
| 40 | A | A | -1.9428 | |
| 41 | P | A | -1.3847 | |
| 42 | G | A | -1.8994 | |
| 43 | K | A | -3.1749 | |
| 44 | E | A | -3.6937 | |
| 45 | R | A | -3.2183 | |
| 46 | E | A | -1.6964 | |
| 47 | W | A | -0.4241 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | T | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | E | A | 0.9559 | |
| 53 | S | A | 1.0011 | |
| 54 | W | A | 1.3366 | |
| 55 | G | A | 1.1005 | |
| 56 | W | A | 2.2042 | |
| 57 | F | A | 2.6536 | |
| 58 | T | A | 1.5106 | |
| 59 | W | A | 0.8484 | |
| 60 | Y | A | -0.4891 | |
| 61 | A | A | 0.0000 | |
| 62 | D | A | -2.3134 | |
| 63 | S | A | -1.7129 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.5203 | |
| 66 | G | A | -1.8071 | |
| 67 | R | A | -1.5173 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -0.7954 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.5307 | |
| 72 | R | A | -1.0691 | |
| 73 | D | A | -1.7837 | |
| 74 | N | A | -1.6985 | |
| 75 | A | A | -1.5294 | |
| 76 | K | A | -2.3035 | |
| 77 | N | A | -1.7866 | |
| 78 | T | A | 0.0000 | |
| 79 | V | A | 0.0000 | |
| 80 | Y | A | 0.0000 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.2776 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.4568 | |
| 85 | S | A | -1.1994 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.1945 | |
| 88 | P | A | -1.8665 | |
| 89 | E | A | -2.2902 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -0.9116 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | -0.6088 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | -0.4132 | |
| 96 | C | A | 0.0000 | |
| 97 | E | A | -0.5142 | |
| 98 | V | A | 0.0000 | |
| 99 | G | A | 0.1512 | |
| 100 | V | A | 1.1046 | |
| 101 | G | A | -0.1508 | |
| 102 | H | A | -0.8312 | |
| 103 | N | A | -1.1017 | |
| 104 | Y | A | -0.5879 | |
| 105 | A | A | -0.5070 | |
| 106 | G | A | -0.5668 | |
| 107 | R | A | -1.6564 | |
| 108 | G | A | 0.0000 | |
| 109 | T | A | 0.0000 | |
| 110 | Q | A | -1.1844 | |
| 111 | V | A | 0.0000 | |
| 112 | T | A | -0.3207 | |
| 113 | V | A | 0.0000 | |
| 114 | S | A | -0.7604 |