Project name: query_structure

Status: done

Started: 2026-03-17 00:38:42
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Chain sequence(s) A: QVQLVESGGGLVQAGGSLRLSCAASGFPVEYNTMYWYRQAPGKEREWVATIESWGWFTWYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCEVGVGHNYAGRGTQVTVS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:40)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:41)
Show buried residues

Minimal score value
-3.6937
Maximal score value
2.6536
Average score
-0.5486
Total score value
-62.5456

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.3758
2 V A -0.7818
3 Q A -0.7241
4 L A 0.0000
5 V A 0.7716
6 E A 0.0000
7 S A -0.7103
8 G A -1.0676
9 G A -0.8387
10 G A -0.1178
11 L A 0.9240
12 V A 0.0000
13 Q A -1.2645
14 A A -1.3994
15 G A -1.3191
16 G A -0.9027
17 S A -1.2361
18 L A -1.0713
19 R A -2.1729
20 L A 0.0000
21 S A -0.4611
22 C A 0.0000
23 A A -0.1088
24 A A 0.0000
25 S A -0.6328
26 G A -1.0609
27 F A 0.0000
28 P A -0.5394
29 V A 0.0000
30 E A -0.0466
31 Y A 1.0578
32 N A 0.5651
33 T A 0.5720
34 M A 0.0000
35 Y A 0.2937
36 W A 0.0000
37 Y A -0.0875
38 R A 0.0000
39 Q A -1.9859
40 A A -1.9428
41 P A -1.3847
42 G A -1.8994
43 K A -3.1749
44 E A -3.6937
45 R A -3.2183
46 E A -1.6964
47 W A -0.4241
48 V A 0.0000
49 A A 0.0000
50 T A 0.0000
51 I A 0.0000
52 E A 0.9559
53 S A 1.0011
54 W A 1.3366
55 G A 1.1005
56 W A 2.2042
57 F A 2.6536
58 T A 1.5106
59 W A 0.8484
60 Y A -0.4891
61 A A 0.0000
62 D A -2.3134
63 S A -1.7129
64 V A 0.0000
65 K A -2.5203
66 G A -1.8071
67 R A -1.5173
68 F A 0.0000
69 T A -0.7954
70 I A 0.0000
71 S A -0.5307
72 R A -1.0691
73 D A -1.7837
74 N A -1.6985
75 A A -1.5294
76 K A -2.3035
77 N A -1.7866
78 T A 0.0000
79 V A 0.0000
80 Y A 0.0000
81 L A 0.0000
82 Q A -1.2776
83 M A 0.0000
84 N A -1.4568
85 S A -1.1994
86 L A 0.0000
87 K A -2.1945
88 P A -1.8665
89 E A -2.2902
90 D A 0.0000
91 T A -0.9116
92 A A 0.0000
93 V A -0.6088
94 Y A 0.0000
95 Y A -0.4132
96 C A 0.0000
97 E A -0.5142
98 V A 0.0000
99 G A 0.1512
100 V A 1.1046
101 G A -0.1508
102 H A -0.8312
103 N A -1.1017
104 Y A -0.5879
105 A A -0.5070
106 G A -0.5668
107 R A -1.6564
108 G A 0.0000
109 T A 0.0000
110 Q A -1.1844
111 V A 0.0000
112 T A -0.3207
113 V A 0.0000
114 S A -0.7604
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Laboratory of Theory of Biopolymers 2018