| Chain sequence(s) |
A: KKGHKGH
C: KKGHKGH B: KKGHKGH E: KKGHKGH D: KKGHKGH G: KKGHKGH F: KKGHKGH I: KKGHKGH H: KKGHKGH K: KKGHKGH J: KKGHKGH M: KKGHKGH L: KKGHKGH O: KKGHKGH N: KKGHKGH Q: KKGHKGH P: KKGHKGH S: KKGHKGH R: KKGHKGH T: KKGHKGH input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:07:16)
[INFO] Main: Simulation completed successfully. (00:07:20)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | K | A | -3.4672 | |
| 2 | K | A | -5.1196 | |
| 3 | G | A | -3.8926 | |
| 4 | H | A | -4.1321 | |
| 5 | K | A | -4.6778 | |
| 6 | G | A | -3.1454 | |
| 7 | H | A | -3.7128 | |
| 1 | K | B | -5.0930 | |
| 2 | K | B | -4.7265 | |
| 3 | G | B | -4.4964 | |
| 4 | H | B | -4.5261 | |
| 5 | K | B | -4.2849 | |
| 6 | G | B | 0.0000 | |
| 7 | H | B | -3.5216 | |
| 1 | K | C | -3.5673 | |
| 2 | K | C | -4.0222 | |
| 3 | G | C | -3.8707 | |
| 4 | H | C | -3.6755 | |
| 5 | K | C | -3.2883 | |
| 6 | G | C | -2.2294 | |
| 7 | H | C | -2.3214 | |
| 1 | K | D | -3.3961 | |
| 2 | K | D | -3.5732 | |
| 3 | G | D | 0.0000 | |
| 4 | H | D | -2.9696 | |
| 5 | K | D | -2.9457 | |
| 6 | G | D | 0.0000 | |
| 7 | H | D | -1.6943 | |
| 1 | K | E | -4.3189 | |
| 2 | K | E | -3.8187 | |
| 3 | G | E | 0.0000 | |
| 4 | H | E | -3.1351 | |
| 5 | K | E | -2.9621 | |
| 6 | G | E | 0.0000 | |
| 7 | H | E | -2.9981 | |
| 1 | K | F | -3.1398 | |
| 2 | K | F | -3.6413 | |
| 3 | G | F | -3.8532 | |
| 4 | H | F | -4.1567 | |
| 5 | K | F | -4.3333 | |
| 6 | G | F | -3.2119 | |
| 7 | H | F | -3.0468 | |
| 1 | K | G | -3.6804 | |
| 2 | K | G | -3.6167 | |
| 3 | G | G | -2.9011 | |
| 4 | H | G | -3.0404 | |
| 5 | K | G | -3.0779 | |
| 6 | G | G | -2.0632 | |
| 7 | H | G | -3.0115 | |
| 1 | K | H | -2.7624 | |
| 2 | K | H | -3.4574 | |
| 3 | G | H | -2.7898 | |
| 4 | H | H | -2.8978 | |
| 5 | K | H | -3.3574 | |
| 6 | G | H | 0.0000 | |
| 7 | H | H | -2.9190 | |
| 1 | K | I | -3.1493 | |
| 2 | K | I | -3.7063 | |
| 3 | G | I | -3.1581 | |
| 4 | H | I | -3.6282 | |
| 5 | K | I | -3.7572 | |
| 6 | G | I | -2.6619 | |
| 7 | H | I | -2.6421 | |
| 1 | K | J | -3.3179 | |
| 2 | K | J | -3.6910 | |
| 3 | G | J | -3.6629 | |
| 4 | H | J | -3.7690 | |
| 5 | K | J | -4.1503 | |
| 6 | G | J | 0.0000 | |
| 7 | H | J | -3.2148 | |
| 1 | K | K | -3.2290 | |
| 2 | K | K | -4.1952 | |
| 3 | G | K | -3.4573 | |
| 4 | H | K | -3.9145 | |
| 5 | K | K | -3.9357 | |
| 6 | G | K | -2.6767 | |
| 7 | H | K | -2.8880 | |
| 1 | K | L | -3.5997 | |
| 2 | K | L | -3.9537 | |
| 3 | G | L | -3.9363 | |
| 4 | H | L | -3.3984 | |
| 5 | K | L | -3.1765 | |
| 6 | G | L | -2.4130 | |
| 7 | H | L | -2.8860 | |
| 1 | K | M | -3.1910 | |
| 2 | K | M | -4.3345 | |
| 3 | G | M | -3.4236 | |
| 4 | H | M | -3.7688 | |
| 5 | K | M | -4.3800 | |
| 6 | G | M | 0.0000 | |
| 7 | H | M | -3.7083 | |
| 1 | K | N | -4.3906 | |
| 2 | K | N | -4.1107 | |
| 3 | G | N | -3.7061 | |
| 4 | H | N | -3.8123 | |
| 5 | K | N | -3.6710 | |
| 6 | G | N | -2.8850 | |
| 7 | H | N | -2.4639 | |
| 1 | K | O | -3.5081 | |
| 2 | K | O | -3.6350 | |
| 3 | G | O | -3.0181 | |
| 4 | H | O | -3.3894 | |
| 5 | K | O | -3.3100 | |
| 6 | G | O | -2.1815 | |
| 7 | H | O | -1.9675 | |
| 1 | K | P | -3.7280 | |
| 2 | K | P | -4.4748 | |
| 3 | G | P | -4.3761 | |
| 4 | H | P | -4.1435 | |
| 5 | K | P | -3.6586 | |
| 6 | G | P | -2.3878 | |
| 7 | H | P | -2.0032 | |
| 1 | K | Q | -3.6361 | |
| 2 | K | Q | -3.8290 | |
| 3 | G | Q | -3.1682 | |
| 4 | H | Q | -3.8060 | |
| 5 | K | Q | -4.2806 | |
| 6 | G | Q | -4.0467 | |
| 7 | H | Q | -4.5008 | |
| 1 | K | R | -2.9936 | |
| 2 | K | R | -3.4376 | |
| 3 | G | R | -3.4865 | |
| 4 | H | R | -3.6122 | |
| 5 | K | R | -3.8101 | |
| 6 | G | R | -3.2163 | |
| 7 | H | R | -2.1601 | |
| 1 | K | S | -3.1784 | |
| 2 | K | S | -4.1962 | |
| 3 | G | S | -4.4214 | |
| 4 | H | S | -4.8013 | |
| 5 | K | S | -4.6370 | |
| 6 | G | S | -3.1473 | |
| 7 | H | S | -2.9872 | |
| 1 | K | T | -4.4711 | |
| 2 | K | T | -4.9937 | |
| 3 | G | T | -4.3349 | |
| 4 | H | T | -3.4156 | |
| 5 | K | T | -3.3608 | |
| 6 | G | T | -1.8184 | |
| 7 | H | T | -1.7030 |