Project name: alphaA

Status: done

Started: 2025-12-22 11:55:42
Settings
Chain sequence(s) A: MDVTIQHPWFKRTLGPFYPSRLFDQFFGEGLFEYDLLPFLSSTISPYYRQSLFRTVLDSGISEVRSDRDKFVIFLDVKHFSPEDLTVKVQDDFVEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSADGMLTFCGPKIQTGLDATHAERAIPVSREEK
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:02)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:02)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:02)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:02)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:08)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:08)
Show buried residues

Minimal score value
-3.8697
Maximal score value
1.4075
Average score
-1.4047
Total score value
-148.902

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
61 I A 1.4075
62 S A -0.0851
63 E A -1.5952
64 V A -0.7141
65 R A -1.8308
66 S A -2.1387
67 D A -3.4212
68 R A -3.3811
69 D A -3.1467
70 K A -2.4255
71 F A -1.4515
72 V A 0.0000
73 I A 0.0000
74 F A 0.0000
75 L A 0.0000
76 D A -1.5257
77 V A 0.0000
78 K A -2.3468
79 H A -2.1198
80 F A 0.0000
81 S A -1.2725
82 P A 0.0000
83 E A -2.4043
84 D A -2.2472
85 L A 0.0000
86 T A -0.9528
87 V A 0.0000
88 K A -1.6077
89 V A 0.0000
90 Q A -3.1257
91 D A -3.3774
92 D A -3.5694
93 F A -2.8267
94 V A 0.0000
95 E A 0.0000
96 I A 0.0000
97 H A -1.8094
98 G A 0.0000
99 K A -3.8241
100 H A -3.2746
101 N A -2.9575
102 E A -2.3468
103 R A -2.6180
104 Q A -2.8527
105 D A -3.0591
106 D A -3.2012
107 H A -2.3103
108 G A -1.4416
109 Y A -0.4577
110 I A -0.6990
111 S A -2.3121
112 R A -3.5562
113 E A -3.8697
114 F A -2.0736
115 H A -2.1032
116 R A -1.7528
117 R A -2.5628
118 Y A -1.7217
119 R A -2.7213
120 L A 0.0000
121 P A -1.3198
122 S A -1.2908
123 N A -1.0730
124 V A 0.0000
125 D A -0.9269
126 Q A 0.0000
127 S A -0.8597
128 A A -0.3621
129 L A 0.0000
130 S A -0.8101
131 C A 0.0000
132 S A 0.0000
133 L A -1.6753
134 S A -1.6029
135 A A -1.2192
136 D A -2.2349
137 G A -1.6209
138 M A -1.4257
139 L A 0.0000
140 T A 0.0000
141 F A 0.0000
142 C A 0.0000
143 G A 0.0000
144 P A -0.8180
145 K A 0.0000
146 I A 0.2768
147 Q A -1.0394
148 T A -1.5144
149 G A -0.4813
150 L A -0.0409
151 D A -1.4530
152 A A -0.9545
153 T A -0.7927
154 H A -1.4604
155 A A -1.9999
156 E A -3.2570
157 R A -2.0686
158 A A -1.0801
159 I A 0.0000
160 P A -0.6530
161 V A -0.9191
162 S A -1.6338
163 R A -3.1449
164 E A -2.9793
165 E A -3.6137
166 K A -3.1697
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Laboratory of Theory of Biopolymers 2018