| Chain sequence(s) |
A: FFGHKGF
C: FFGHKGF B: FFGHKGF E: FFGHKGF D: FFGHKGF G: FFGHKGF F: FFGHKGF I: FFGHKGF H: FFGHKGF K: FFGHKGF J: FFGHKGF L: FFGHKGF input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:29)
[INFO] Main: Simulation completed successfully. (00:01:31)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 4.4228 | |
| 2 | F | A | 2.9145 | |
| 3 | G | A | 1.1031 | |
| 4 | H | A | -0.6602 | |
| 5 | K | A | -1.6375 | |
| 6 | G | A | -0.5429 | |
| 7 | F | A | 1.2175 | |
| 1 | F | B | 4.1022 | |
| 2 | F | B | 1.8445 | |
| 3 | G | B | 0.2978 | |
| 4 | H | B | -1.1649 | |
| 5 | K | B | -1.8051 | |
| 6 | G | B | -0.5620 | |
| 7 | F | B | 1.2874 | |
| 1 | F | C | 3.6279 | |
| 2 | F | C | 2.4611 | |
| 3 | G | C | 0.1388 | |
| 4 | H | C | -1.2424 | |
| 5 | K | C | -2.0156 | |
| 6 | G | C | -0.6716 | |
| 7 | F | C | 1.3217 | |
| 1 | F | D | 3.3348 | |
| 2 | F | D | 2.1723 | |
| 3 | G | D | -0.3810 | |
| 4 | H | D | -1.4913 | |
| 5 | K | D | -2.3758 | |
| 6 | G | D | -0.8045 | |
| 7 | F | D | 1.1991 | |
| 1 | F | E | 4.0946 | |
| 2 | F | E | 3.4459 | |
| 3 | G | E | 0.5988 | |
| 4 | H | E | -0.9564 | |
| 5 | K | E | -2.2166 | |
| 6 | G | E | -0.8269 | |
| 7 | F | E | 1.2438 | |
| 1 | F | F | 4.7068 | |
| 2 | F | F | 3.6548 | |
| 3 | G | F | 1.1750 | |
| 4 | H | F | -0.2893 | |
| 5 | K | F | -1.6780 | |
| 6 | G | F | -0.6972 | |
| 7 | F | F | 1.3114 | |
| 1 | F | G | 5.0373 | |
| 2 | F | G | 2.9864 | |
| 3 | G | G | 0.0000 | |
| 4 | H | G | -1.2315 | |
| 5 | K | G | -1.8971 | |
| 6 | G | G | -0.6970 | |
| 7 | F | G | 1.1443 | |
| 1 | F | H | 4.2114 | |
| 2 | F | H | 2.3297 | |
| 3 | G | H | 0.2199 | |
| 4 | H | H | -1.3781 | |
| 5 | K | H | -1.8895 | |
| 6 | G | H | -0.3169 | |
| 7 | F | H | 1.4164 | |
| 1 | F | I | 4.2256 | |
| 2 | F | I | 2.6549 | |
| 3 | G | I | 0.1108 | |
| 4 | H | I | -1.3157 | |
| 5 | K | I | -1.9700 | |
| 6 | G | I | -0.9323 | |
| 7 | F | I | 1.1327 | |
| 1 | F | J | 3.6407 | |
| 2 | F | J | 2.5590 | |
| 3 | G | J | 0.0152 | |
| 4 | H | J | -1.1205 | |
| 5 | K | J | -2.1142 | |
| 6 | G | J | -0.6270 | |
| 7 | F | J | 1.2444 | |
| 1 | F | K | 4.1702 | |
| 2 | F | K | 1.5406 | |
| 3 | G | K | -0.2409 | |
| 4 | H | K | -1.8947 | |
| 5 | K | K | -2.4151 | |
| 6 | G | K | -0.6693 | |
| 7 | F | K | 1.1404 | |
| 1 | F | L | 4.0835 | |
| 2 | F | L | 3.3462 | |
| 3 | G | L | 0.3402 | |
| 4 | H | L | -1.1909 | |
| 5 | K | L | -2.0461 | |
| 6 | G | L | -0.6314 | |
| 7 | F | L | 1.1718 |