| Chain sequence(s) |
A: GLPVCGETCFGGTCNTPGCACDPWPVCTRD
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:02)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:02)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:02)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:02)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:02)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:14)
[INFO] Main: Simulation completed successfully. (00:00:15)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | 0.3403 | |
| 2 | L | A | 1.0461 | |
| 3 | P | A | -0.1583 | |
| 4 | V | A | 0.2262 | |
| 5 | C | A | -0.3873 | |
| 6 | G | A | -0.1880 | |
| 7 | E | A | -0.1337 | |
| 8 | T | A | 0.3907 | |
| 9 | C | A | 0.0000 | |
| 10 | F | A | 1.8569 | |
| 11 | G | A | 0.3687 | |
| 12 | G | A | 0.1593 | |
| 13 | T | A | -0.1339 | |
| 14 | C | A | -0.9086 | |
| 15 | N | A | -1.3770 | |
| 16 | T | A | -1.1466 | |
| 17 | P | A | -0.9667 | |
| 18 | G | A | -1.4189 | |
| 19 | C | A | -1.6272 | |
| 20 | A | A | -1.2266 | |
| 21 | C | A | -0.3972 | |
| 22 | D | A | -1.6917 | |
| 23 | P | A | -0.6551 | |
| 24 | W | A | 0.9038 | |
| 25 | P | A | 1.0216 | |
| 26 | V | A | 0.6588 | |
| 27 | C | A | 0.0000 | |
| 28 | T | A | -1.1420 | |
| 29 | R | A | -2.6288 | |
| 30 | D | A | -2.7076 |