| Chain sequence(s) |
A: AEAEAKAKAEAEAKAK
C: AEAEAKAKAEAEAKAK B: AEAEAKAKAEAEAKAK E: AEAEAKAKAEAEAKAK D: AEAEAKAKAEAEAKAK G: AEAEAKAKAEAEAKAK F: AEAEAKAKAEAEAKAK H: KAEAEAKAK input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,H |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:08:11)
[INFO] Main: Simulation completed successfully. (00:08:13)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | A | A | -1.8176 | |
| 2 | E | A | -3.0118 | |
| 3 | A | A | -2.8978 | |
| 4 | E | A | -3.5089 | |
| 5 | A | A | -2.2497 | |
| 6 | K | A | -2.6996 | |
| 7 | A | A | 0.0000 | |
| 8 | K | A | -3.0501 | |
| 9 | A | A | -2.4261 | |
| 10 | E | A | -2.4953 | |
| 11 | A | A | 0.0000 | |
| 12 | E | A | -3.1088 | |
| 13 | A | A | -3.0678 | |
| 14 | K | A | -3.2098 | |
| 15 | A | A | -2.6043 | |
| 16 | K | A | -2.8898 | |
| 1 | A | B | -1.2356 | |
| 2 | E | B | -2.3020 | |
| 3 | A | B | -1.8472 | |
| 4 | E | B | -2.4090 | |
| 5 | A | B | -1.3127 | |
| 6 | K | B | -2.1586 | |
| 7 | A | B | -2.3016 | |
| 8 | K | B | -2.7210 | |
| 9 | A | B | -1.9742 | |
| 10 | E | B | 0.0000 | |
| 11 | A | B | 0.0000 | |
| 12 | E | B | -3.4419 | |
| 13 | A | B | -2.5096 | |
| 14 | K | B | -2.9661 | |
| 15 | A | B | -2.6825 | |
| 16 | K | B | -2.5681 | |
| 1 | A | C | -1.4888 | |
| 2 | E | C | -2.9627 | |
| 3 | A | C | -2.4220 | |
| 4 | E | C | -3.0846 | |
| 5 | A | C | -2.2298 | |
| 6 | K | C | -2.7250 | |
| 7 | A | C | 0.0000 | |
| 8 | K | C | -3.4109 | |
| 9 | A | C | -2.5723 | |
| 10 | E | C | -3.1931 | |
| 11 | A | C | -3.1046 | |
| 12 | E | C | -3.5903 | |
| 13 | A | C | -3.0990 | |
| 14 | K | C | -2.9764 | |
| 15 | A | C | -2.2757 | |
| 16 | K | C | -2.8809 | |
| 1 | A | D | -1.1922 | |
| 2 | E | D | -2.5677 | |
| 3 | A | D | -2.0578 | |
| 4 | E | D | -2.4056 | |
| 5 | A | D | -1.5791 | |
| 6 | K | D | -2.4114 | |
| 7 | A | D | 0.0000 | |
| 8 | K | D | -3.2722 | |
| 9 | A | D | -2.0593 | |
| 10 | E | D | -2.9310 | |
| 11 | A | D | -3.4018 | |
| 12 | E | D | -3.4697 | |
| 13 | A | D | -2.8249 | |
| 14 | K | D | -3.0471 | |
| 15 | A | D | -2.4725 | |
| 16 | K | D | -2.7497 | |
| 1 | A | E | -1.4150 | |
| 2 | E | E | -2.4593 | |
| 3 | A | E | -1.6412 | |
| 4 | E | E | -2.2558 | |
| 5 | A | E | -1.4420 | |
| 6 | K | E | -2.2152 | |
| 7 | A | E | -2.2120 | |
| 8 | K | E | -2.8136 | |
| 9 | A | E | -2.1888 | |
| 10 | E | E | -2.6960 | |
| 11 | A | E | -3.0542 | |
| 12 | E | E | -3.4626 | |
| 13 | A | E | -3.1807 | |
| 14 | K | E | -3.4222 | |
| 15 | A | E | -2.4147 | |
| 16 | K | E | -3.0071 | |
| 1 | A | F | -1.4040 | |
| 2 | E | F | -2.7333 | |
| 3 | A | F | -2.5260 | |
| 4 | E | F | -3.2386 | |
| 5 | A | F | -2.4938 | |
| 6 | K | F | -2.8531 | |
| 7 | A | F | -3.3261 | |
| 8 | K | F | -3.8852 | |
| 9 | A | F | -2.7435 | |
| 10 | E | F | -3.1742 | |
| 11 | A | F | -3.2827 | |
| 12 | E | F | -3.5882 | |
| 13 | A | F | -3.2054 | |
| 14 | K | F | -3.4093 | |
| 15 | A | F | -2.4551 | |
| 16 | K | F | -2.8392 | |
| 1 | A | G | -2.0065 | |
| 2 | E | G | -3.2400 | |
| 3 | A | G | 0.0000 | |
| 4 | E | G | -3.5428 | |
| 5 | A | G | -2.4565 | |
| 6 | K | G | -2.8409 | |
| 7 | A | G | -2.8478 | |
| 8 | K | G | -3.3810 | |
| 9 | A | G | -2.3278 | |
| 10 | E | G | -2.8974 | |
| 11 | A | G | 0.0000 | |
| 12 | E | G | -3.1400 | |
| 13 | A | G | -2.5485 | |
| 14 | K | G | -3.0809 | |
| 15 | A | G | -2.3880 | |
| 16 | K | G | -2.6608 | |
| 1 | K | H | -2.3463 | |
| 2 | A | H | -2.0815 | |
| 3 | E | H | -2.8499 | |
| 4 | A | H | -2.2436 | |
| 5 | E | H | -2.7333 | |
| 6 | A | H | -2.6053 | |
| 7 | K | H | -2.8203 | |
| 8 | A | H | -2.1700 | |
| 9 | K | H | -2.4159 |