Project name: EAK16-II_8

Status: done

Started: 2026-06-24 07:04:52
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Chain sequence(s) A: AEAEAKAKAEAEAKAK
C: AEAEAKAKAEAEAKAK
B: AEAEAKAKAEAEAKAK
E: AEAEAKAKAEAEAKAK
D: AEAEAKAKAEAEAKAK
G: AEAEAKAKAEAEAKAK
F: AEAEAKAKAEAEAKAK
H: KAEAEAKAK
input PDB
Selected Chain(s) A,C,B,E,D,G,F,H
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:08:11)
[INFO]       Main:     Simulation completed successfully.                                          (00:08:13)
Show buried residues

Minimal score value
-3.8852
Maximal score value
0.0
Average score
-2.4842
Total score value
-300.5887

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A A -1.8176
2 E A -3.0118
3 A A -2.8978
4 E A -3.5089
5 A A -2.2497
6 K A -2.6996
7 A A 0.0000
8 K A -3.0501
9 A A -2.4261
10 E A -2.4953
11 A A 0.0000
12 E A -3.1088
13 A A -3.0678
14 K A -3.2098
15 A A -2.6043
16 K A -2.8898
1 A B -1.2356
2 E B -2.3020
3 A B -1.8472
4 E B -2.4090
5 A B -1.3127
6 K B -2.1586
7 A B -2.3016
8 K B -2.7210
9 A B -1.9742
10 E B 0.0000
11 A B 0.0000
12 E B -3.4419
13 A B -2.5096
14 K B -2.9661
15 A B -2.6825
16 K B -2.5681
1 A C -1.4888
2 E C -2.9627
3 A C -2.4220
4 E C -3.0846
5 A C -2.2298
6 K C -2.7250
7 A C 0.0000
8 K C -3.4109
9 A C -2.5723
10 E C -3.1931
11 A C -3.1046
12 E C -3.5903
13 A C -3.0990
14 K C -2.9764
15 A C -2.2757
16 K C -2.8809
1 A D -1.1922
2 E D -2.5677
3 A D -2.0578
4 E D -2.4056
5 A D -1.5791
6 K D -2.4114
7 A D 0.0000
8 K D -3.2722
9 A D -2.0593
10 E D -2.9310
11 A D -3.4018
12 E D -3.4697
13 A D -2.8249
14 K D -3.0471
15 A D -2.4725
16 K D -2.7497
1 A E -1.4150
2 E E -2.4593
3 A E -1.6412
4 E E -2.2558
5 A E -1.4420
6 K E -2.2152
7 A E -2.2120
8 K E -2.8136
9 A E -2.1888
10 E E -2.6960
11 A E -3.0542
12 E E -3.4626
13 A E -3.1807
14 K E -3.4222
15 A E -2.4147
16 K E -3.0071
1 A F -1.4040
2 E F -2.7333
3 A F -2.5260
4 E F -3.2386
5 A F -2.4938
6 K F -2.8531
7 A F -3.3261
8 K F -3.8852
9 A F -2.7435
10 E F -3.1742
11 A F -3.2827
12 E F -3.5882
13 A F -3.2054
14 K F -3.4093
15 A F -2.4551
16 K F -2.8392
1 A G -2.0065
2 E G -3.2400
3 A G 0.0000
4 E G -3.5428
5 A G -2.4565
6 K G -2.8409
7 A G -2.8478
8 K G -3.3810
9 A G -2.3278
10 E G -2.8974
11 A G 0.0000
12 E G -3.1400
13 A G -2.5485
14 K G -3.0809
15 A G -2.3880
16 K G -2.6608
1 K H -2.3463
2 A H -2.0815
3 E H -2.8499
4 A H -2.2436
5 E H -2.7333
6 A H -2.6053
7 K H -2.8203
8 A H -2.1700
9 K H -2.4159
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Laboratory of Theory of Biopolymers 2018