Project name: 16cdcd3e56ff31a

Status: done

Started: 2024-12-19 02:54:26
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Chain sequence(s) H: EVQLVERLSCAASGFNLYSSSIHWVRQALEWVAYIYSSSGSTSYADSVKGRFTISADTSKNTAYLQVYYCARGYYSWYKASWALADYW
L: DIQMTQSPSVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQGSSLGLLTFGQGTKV
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:25)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:26)
Show buried residues

Minimal score value
-3.0296
Maximal score value
1.656
Average score
-0.4424
Total score value
-81.4017

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
4 E H -1.8618
5 V H -1.0086
6 Q H -1.2060
7 L H 0.0000
8 V H 0.5649
9 E H -0.5105
22 R H -2.1804
23 L H -1.0159
24 S H -0.6965
25 C H 0.0000
26 A H -0.6177
27 A H 0.0000
28 S H -0.9685
29 G H -1.1860
30 F H -0.7792
31 N H -1.1041
32 L H 0.0000
33 Y H 0.4807
34 S H 0.0700
35 S H 0.0415
36 S H 0.0000
37 I H 0.0000
38 H H 0.0000
39 W H 0.0000
40 V H 0.0000
41 R H -0.2380
42 Q H -0.0802
43 A H 0.1137
48 L H -0.6471
49 E H -1.4274
50 W H 0.0000
51 V H 0.0000
52 A H 0.0000
53 Y H 0.0000
54 I H 0.0000
55 Y H 0.2391
56 S H -0.1180
57 S H -0.0034
58 S H -0.3288
59 G H -0.4497
60 S H -0.3477
61 T H -0.1550
62 S H -0.1996
63 Y H -0.7510
64 A H -1.4614
65 D H -2.4787
66 S H -1.7711
67 V H 0.0000
68 K H -3.0296
69 G H -2.3550
70 R H -2.6460
71 F H -1.7711
72 T H -1.3152
73 I H 0.0000
74 S H -0.5634
75 A H -0.7012
76 D H -1.4884
77 T H -1.2186
78 S H -1.4420
79 K H -2.3458
80 N H -1.4965
81 T H 0.0000
82 A H 0.0000
83 Y H -0.9311
84 L H 0.0000
85 Q H -2.1833
96 V H 1.6481
97 Y H 0.7526
98 Y H 0.0000
99 C H 0.0000
100 A H 0.0000
101 R H -0.2906
102 G H 0.1305
103 Y H 0.9375
104 Y H 1.5836
105 S H 0.0000
106 W H 1.6560
107 Y H 1.1582
108 K H -0.6610
109 A H 0.3850
110 S H 0.0000
111 W H 0.0000
112 A H 0.0000
113 L H 0.0000
114 A H -0.3585
115 D H -0.9203
116 Y H 0.0000
117 W H 0.2173
1 D L -2.0442
2 I L -1.3953
3 Q L -1.9969
4 M L 0.0000
5 T L -1.3658
6 Q L 0.0000
7 S L -0.7929
8 P L -0.6045
9 S L -0.8470
19 V L 1.4846
20 T L 0.4795
21 I L 0.0000
22 T L -0.6407
23 C L 0.0000
24 R L -2.7029
25 A L 0.0000
26 S L -1.7735
27 Q L -1.9352
28 S L -1.0870
29 V L -0.4235
36 S L -0.8432
37 S L -0.8184
38 A L -0.3247
39 V L 0.0000
40 A L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L -0.8611
44 Q L -1.1500
45 K L -1.4539
46 P L -0.9652
47 G L -1.2853
48 K L -2.1061
49 A L -1.0207
50 P L 0.0000
51 K L -1.5714
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L 0.5259
56 S L 0.0000
57 A L 0.0000
65 S L -0.4263
66 S L 0.1842
67 L L 0.4152
68 Y L 0.2003
69 S L -0.1747
70 G L -0.4721
71 V L 0.0000
72 P L -0.4095
74 S L -0.4675
75 R L -0.5454
76 F L 0.0000
77 S L -0.3759
78 G L -0.5147
79 S L -1.1196
80 R L -2.0995
83 S L -1.5049
84 G L -1.3237
85 T L -1.6363
86 D L -1.8361
87 F L 0.0000
88 T L -0.7761
89 L L 0.0000
90 T L 0.1581
91 I L 0.0000
92 S L -0.0732
93 S L 0.0193
94 L L 0.5770
95 Q L -0.6291
96 P L -0.7873
97 E L -1.4278
98 D L 0.0000
99 F L 1.2007
100 A L 0.0000
101 T L 0.0000
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 G L 0.0000
108 S L 0.5238
109 S L 0.7156
113 L L 1.6499
114 G L 0.0000
115 L L 0.8665
116 L L 0.0000
117 T L -0.5570
118 F L 0.0000
119 G L -1.2403
120 Q L -1.6121
121 G L -1.0263
122 T L 0.0000
123 K L -1.0886
124 V L 1.0623
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Laboratory of Theory of Biopolymers 2018