Project name: 4fduAB-1 [mutate: VN351A]

Status: done

Started: 2026-05-29 08:47:44
Settings
Chain sequence(s) A: HMQTKIQKYAGTAMPYPNRTMTPFYINHLGRHGARFPTSRKALDKVEKVLVSAQQENGLTSEGMALLSMIRRLSRLFDGQWGKLSKLGETEQEGIAGRMIRNYPQLFSNSAKIEAIATYVPRSINSMDAFLSCMIRHNPALQVQRSEGKQYNHILRFFDLNKSYVNYKEKGDWLPIYKAFVHKKISPVPIMKKFLLNPEQYLDKEAEEFVMALFSVAAILPDTSIPLNLEDLFTLDEWHRYWQTQNLRQYMSKSSAPVGKMLPVAIAWPLLSEFIRSAQEVISGKSDYQANFRFAHAETVIPFVSLMGIEKTDVQVCRPDSVSVYWKDYEISPMAANVQWLFYRDRDQRIWVKILLNEEAAALPISTACFPYYSWEKTRIFFNQRIEMAKKTLSVFN
B: QTKIQKYAGTAMPYPNRTMTPFYINHLGRHGARFPTSRKALDKVEKVLVSAQQENGLTSEGMALLSMIRRLSRLFDGQWGKLSKLGETEQEGIAGRMIRNYPQLFSNSAKIEAIATYVPRSINSMDAFLSCMIRHNPALQVQRSEGKQYNHILRFFDLNKSYVNYKEKGDWLPIYKAFVHKKISPVPIMKKFLLNPEQYLDKEAEEFVMALFSVAAILPDTSIPLNLEDLFTLDEWHRYWQTQNLRQYMSKSSAPVGKMLPVAIAWPLLSEFIRSAQEVISGKSDYQANFRFAHAETVIPFVSLMGIEKTDVQVCRPDSVSVYWKDYEISPMAANVQWLFYRDRDQRIWVKILLNEEAAALPISTACFPYYSWEKTRIFFNQRIEMAKKTLSVFN
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues VN351A
Energy difference between WT (input) and mutated protein (by FoldX) -0.376733 kcal/mol
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:02)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:02)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:02)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:02)
[INFO]       FoldX:    Building mutant model                                                       (00:10:55)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:11:11)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:21:35)
[INFO]       Main:     Simulation completed successfully.                                          (00:21:50)
Show buried residues

Minimal score value
-4.1056
Maximal score value
1.6964
Average score
-0.8212
Total score value
-650.3513

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
19 H A -1.2570
20 M A -0.6810
21 Q A -1.5313
22 T A -1.3642
23 K A -1.5961
24 I A -1.3595
25 Q A -0.9814
26 K A -1.3662
27 Y A 0.0000
28 A A -0.4268
29 G A 0.0000
30 T A -0.4227
31 A A -0.1543
32 M A 0.0000
33 P A -0.2935
34 Y A 0.0000
35 P A -1.1516
36 N A -1.5507
37 R A -1.4603
38 T A -0.7101
48 M A 0.6245
49 T A -0.0578
50 P A 0.0000
51 F A 0.2467
52 Y A 0.0000
53 I A 0.0000
54 N A 0.0000
55 H A 0.0000
56 L A 0.0000
57 G A 0.0000
58 R A 0.0000
59 H A 0.0000
60 G A 0.0000
61 A A 0.0000
62 R A -0.9769
63 F A 0.0000
64 P A -0.8392
65 T A -0.9179
66 S A -1.4190
67 R A -2.8664
68 K A -2.8536
69 A A -2.0967
70 L A 0.0000
71 D A -2.5029
72 K A -2.5912
73 V A 0.0000
74 E A -2.0115
75 K A -2.1047
76 V A -1.3182
77 L A 0.0000
78 V A -1.3220
79 S A -1.5684
80 A A 0.0000
81 Q A -2.0150
82 Q A -2.7163
83 E A -3.1697
84 N A -2.5350
85 G A -1.3596
86 L A -0.9624
87 T A -0.7263
88 S A -0.4835
89 E A -1.3172
90 G A 0.0000
91 M A 0.2758
92 A A -0.0473
93 L A 0.0000
94 L A 0.0000
95 S A -0.9234
96 M A -1.3600
97 I A 0.0000
98 R A -3.0975
99 R A -3.1815
100 L A 0.0000
101 S A -2.8876
102 R A -3.3692
103 L A -1.8345
104 F A 0.0000
105 D A -2.9756
106 G A -1.8436
107 Q A -1.6750
108 W A -1.2312
109 G A 0.0000
110 K A -1.9497
111 L A -1.3292
112 S A 0.0000
113 K A -1.8686
114 L A -0.7517
115 G A 0.0000
116 E A -1.4277
117 T A -0.9036
118 E A 0.0000
119 Q A 0.0000
120 E A -1.0642
121 G A -0.8435
122 I A 0.0000
123 A A 0.0000
124 G A 0.0000
125 R A -1.4955
126 M A 0.0000
127 I A -1.5251
128 R A -2.6940
129 N A -2.2322
130 Y A -1.2957
131 P A -1.8459
132 Q A -1.6599
133 L A 0.0000
134 F A 0.0000
135 S A -1.4038
136 N A -1.8826
137 S A -1.3438
138 A A 0.0000
139 K A -1.6368
140 I A 0.0000
141 E A -1.1357
142 A A 0.0000
143 I A 0.0000
144 A A 0.0000
145 T A 0.0000
146 Y A -0.3870
147 V A 0.0000
148 P A -0.6467
149 R A -1.0272
150 S A 0.0000
151 I A -0.4815
152 N A -1.1273
153 S A 0.0000
154 M A 0.0000
155 D A -1.2308
156 A A -1.0524
157 F A 0.0000
158 L A 0.0000
159 S A -0.7729
160 C A 0.0000
161 M A 0.0000
162 I A -0.5144
163 R A -1.8311
164 H A -1.4902
165 N A -1.2187
166 P A -1.0041
167 A A -0.9843
168 L A 0.0000
169 Q A -1.7272
170 V A -1.0899
171 Q A -1.8059
172 R A -1.9216
173 S A -1.1453
174 E A -1.2507
175 G A -1.3080
176 K A -2.4463
177 Q A -2.2330
178 Y A -1.3856
179 N A -1.5194
180 H A -1.3530
181 I A -0.3652
182 L A 0.0000
183 R A -0.9519
184 F A 0.0000
185 F A 0.0000
186 D A -1.0971
187 L A -0.0822
188 N A -0.9905
189 K A -1.9404
190 S A -1.3805
191 Y A 0.0000
192 V A -1.6641
193 N A -2.2848
194 Y A -2.1366
195 K A -2.6292
196 E A -3.2712
197 K A -3.2663
198 G A -2.3924
199 D A -2.1734
200 W A 0.0000
201 L A -1.3738
202 P A -0.9737
203 I A -0.3438
204 Y A -0.9870
205 K A -1.6940
206 A A -1.2622
207 F A 0.0000
208 V A 0.0000
209 H A -2.7350
210 K A -2.7808
211 K A -1.9830
212 I A 0.0000
213 S A -1.0707
214 P A -1.4157
215 V A -1.1267
216 P A -0.9650
217 I A 0.0000
218 M A 0.0000
219 K A -2.3914
220 K A -1.7394
221 F A 0.0000
222 L A 0.0000
223 L A -0.7196
224 N A -1.9612
225 P A -1.8747
226 E A -2.7504
227 Q A -2.0497
228 Y A -1.4816
229 L A -1.3583
230 D A -3.1766
231 K A -3.4962
232 E A -3.1115
233 A A 0.0000
234 E A -2.4726
235 E A -2.8568
236 F A 0.0000
237 V A 0.0000
238 M A -0.7578
239 A A 0.0000
240 L A 0.0000
241 F A 0.0000
242 S A -0.2331
243 V A 0.0000
244 A A 0.0000
245 A A 0.0000
246 I A 0.0000
247 L A 0.0000
248 P A -0.3720
249 D A 0.0000
250 T A 0.0000
251 S A -0.4853
252 I A -0.2026
253 P A -0.3623
254 L A -0.4759
255 N A -1.6202
256 L A 0.0000
257 E A -1.5102
258 D A -2.1444
259 L A 0.0000
260 F A 0.0000
261 T A -1.1008
262 L A -1.2475
263 D A -2.1188
264 E A -1.5773
265 W A 0.0000
266 H A -1.7018
267 R A -1.8906
268 Y A 0.0000
269 W A 0.0000
270 Q A 0.0000
271 T A 0.0000
272 Q A -0.4493
273 N A 0.0000
274 L A 0.0000
275 R A -0.7464
276 Q A 0.0000
277 Y A 0.0000
278 M A 0.0000
279 S A 0.0000
280 K A -0.5437
281 S A 0.0000
282 S A 0.0000
283 A A 0.0000
284 P A -0.5132
285 V A -0.2979
286 G A 0.0000
287 K A -1.2416
288 M A -0.6753
289 L A 0.0000
290 P A 0.0000
291 V A 0.0000
292 A A 0.0000
293 I A 0.0000
294 A A 0.0000
295 W A -0.3628
296 P A 0.0000
297 L A 0.0000
298 L A 0.0000
299 S A 0.0000
300 E A -0.9609
301 F A 0.0000
302 I A 0.0000
303 R A -2.3088
304 S A -1.6855
305 A A 0.0000
306 Q A -1.8293
307 E A -2.4737
308 V A -1.5202
309 I A -0.9480
310 S A -1.3177
311 G A -1.9054
312 K A -2.5997
313 S A -2.0172
314 D A -2.0888
315 Y A -1.1836
316 Q A -0.6399
317 A A 0.0000
318 N A 0.0000
319 F A 0.0000
320 R A 0.0000
321 F A 0.0000
322 A A 0.0000
323 H A 0.0000
324 A A 0.0000
325 E A -0.7213
326 T A 0.0000
327 V A 0.0000
328 I A 0.0000
329 P A 0.0000
330 F A 0.0000
331 V A 0.0000
332 S A 0.0000
333 L A 0.0000
334 M A 0.0000
335 G A 0.0000
336 I A 0.0000
337 E A -1.0666
338 K A -1.4493
339 T A 0.0000
340 D A -0.8218
341 V A -0.4937
342 Q A -0.6279
343 V A 0.0000
344 C A -0.8118
345 R A -2.3325
346 P A -1.7596
347 D A -2.7554
348 S A -1.8214
349 V A 0.0000
350 S A -1.1355
351 N A -1.5088 mutated: VN351A
352 Y A -0.7298
353 W A 0.0000
354 K A -1.4563
355 D A 0.0000
356 Y A 0.0000
357 E A -2.0250
358 I A 0.0000
359 S A 0.0000
360 P A 0.0000
361 M A 0.0000
362 A A 0.0000
363 A A 0.0000
364 N A 0.0000
365 V A 0.0000
366 Q A 0.0000
367 W A 0.0000
368 L A 0.0000
369 F A 0.0000
370 Y A 0.0000
371 R A -3.1960
372 D A -3.2889
373 R A -3.8541
374 D A -4.1056
375 Q A -3.9735
376 R A -3.6868
377 I A 0.0000
378 W A -1.2499
379 V A 0.0000
380 K A -0.2580
381 I A 0.0000
382 L A 0.0000
383 L A -0.8306
384 N A 0.0000
385 E A -1.2982
386 E A -2.0058
387 A A -0.9132
388 A A 0.0000
389 A A -0.5568
390 L A 0.0000
391 P A -0.2494
392 I A -0.0607
393 S A -0.3402
394 T A -0.1532
395 A A -0.0645
396 C A 0.1028
397 F A 0.0000
398 P A -0.0104
399 Y A 0.2939
400 Y A 0.0000
401 S A -1.2674
402 W A 0.0000
403 E A -2.2772
404 K A -1.7025
405 T A 0.0000
406 R A -1.0989
407 I A 0.2742
408 F A -0.2871
409 F A 0.0000
410 N A -1.2228
411 Q A -1.6672
412 R A -1.2044
413 I A 0.0000
414 E A -2.5814
415 M A -1.7233
416 A A 0.0000
417 K A -2.0822
418 K A -1.8844
419 T A -0.9426
420 L A -0.6270
421 S A -0.3808
422 V A 0.8865
423 F A 0.0956
424 N A -0.8508
21 Q B -1.9958
22 T B -1.6112
23 K B -2.0035
24 I B -1.1204
25 Q B -1.4359
26 K B -1.7261
27 Y B 0.0000
28 A B -0.5253
29 G B 0.0000
30 T B -0.3322
31 A B -0.1210
32 M B 0.0000
33 P B -0.3758
34 Y B -0.5449
35 P B 0.0000
36 N B -1.6532
37 R B -1.3023
38 T B -0.6201
48 M B 0.8185
49 T B -0.1267
50 P B 0.0000
51 F B -0.0369
52 Y B 0.0000
53 I B 0.0000
54 N B 0.0000
55 H B 0.0000
56 L B 0.0000
57 G B 0.0000
58 R B 0.0000
59 H B 0.0000
60 G B 0.0000
61 A B 0.0000
62 R B -0.8924
63 F B -0.5041
64 P B -0.5568
65 T B -0.6565
66 S B -1.1228
67 R B -2.2384
68 K B -2.6703
69 A B -2.1334
70 L B 0.0000
71 D B -2.6907
72 K B -2.7748
73 V B 0.0000
74 E B -2.3042
75 K B -2.3911
76 V B 0.0000
77 L B 0.0000
78 V B -1.1877
79 S B -1.5173
80 A B 0.0000
81 Q B -2.0242
82 Q B -2.5601
83 E B -3.0995
84 N B -2.4491
85 G B -1.4757
86 L B -1.0596
87 T B -0.8409
88 S B -0.5634
89 E B -1.3593
90 G B 0.0000
91 M B -0.0226
92 A B -0.1258
93 L B 0.0000
94 L B 0.0000
95 S B -1.1137
96 M B -0.8869
97 I B 0.0000
98 R B -2.8561
99 R B -3.1785
100 L B 0.0000
101 S B -2.7165
102 R B -3.2384
103 L B -1.5587
104 F B 0.0000
105 D B -2.8169
106 G B -1.7386
107 Q B -1.4288
108 W B -0.9287
109 G B 0.0000
110 K B -1.6602
111 L B -1.4520
112 S B 0.0000
113 K B -2.1278
114 L B -1.1133
115 G B 0.0000
116 E B -2.6471
117 T B -1.7003
118 E B 0.0000
119 Q B 0.0000
120 E B -2.3146
121 G B -1.4539
122 I B 0.0000
123 A B 0.0000
124 G B 0.0000
125 R B -1.6725
126 M B 0.0000
127 I B -1.5532
128 R B -2.6327
129 N B -2.3413
130 Y B -1.3177
131 P B -1.8261
132 Q B -1.7919
133 L B 0.0000
134 F B 0.0000
135 S B -1.4346
136 N B -1.8533
137 S B -1.2978
138 A B 0.0000
139 K B -1.7181
140 I B 0.0000
141 E B -1.2163
142 A B 0.0000
143 I B 0.0000
144 A B 0.0000
145 T B 0.0000
146 Y B -0.2881
147 V B 0.0000
148 P B -0.6956
149 R B -1.1471
150 S B 0.0000
151 I B -0.6942
152 N B -1.7577
153 S B 0.0000
154 M B 0.0000
155 D B -1.5786
156 A B -1.4711
157 F B 0.0000
158 L B 0.0000
159 S B -0.9296
160 C B 0.0000
161 M B 0.0000
162 I B -0.6332
163 R B -2.0033
164 H B -1.6102
165 N B -1.3647
166 P B -1.0605
167 A B -0.9933
168 L B 0.0000
169 Q B -1.4017
170 V B -1.0014
171 Q B -1.7923
172 R B -1.9186
173 S B -1.1593
174 E B -1.1283
175 G B -1.1500
176 K B -2.3763
177 Q B -2.1873
178 Y B -1.3095
179 N B -1.6208
180 H B -1.4958
181 I B -0.3387
182 L B 0.0000
183 R B -1.1489
184 F B 0.0000
185 F B 0.0000
186 D B -1.6818
187 L B -0.5716
188 N B -1.2317
189 K B -2.0777
190 S B -1.3264
191 Y B 0.0000
192 V B -1.7304
193 N B -2.4427
194 Y B 0.0000
195 K B -2.5986
196 E B -3.2724
197 K B -3.3137
198 G B -2.3991
199 D B -2.2129
200 W B 0.0000
201 L B -1.3858
202 P B -0.9518
203 I B -0.2999
204 Y B -0.9845
205 K B -1.7187
206 A B -1.2540
207 F B 0.0000
208 V B 0.0000
209 H B -2.6478
210 K B -2.5383
211 K B -1.7820
212 I B 0.0000
213 S B -0.5079
214 P B -0.6010
215 V B 0.6045
216 P B -0.1338
217 I B 0.0000
218 M B 0.0000
219 K B -2.1061
220 K B -1.6783
221 F B 0.0000
222 L B 0.0000
223 L B -0.8853
224 N B -1.9693
225 P B 0.0000
226 E B -2.5350
227 Q B -2.1204
228 Y B -1.3902
229 L B -0.9356
230 D B -2.7904
231 K B -3.2364
232 E B -2.6513
233 A B 0.0000
234 E B -2.1419
235 E B -3.0153
236 F B 0.0000
237 V B 0.0000
238 M B -0.7159
239 A B 0.0000
240 L B 0.0000
241 F B 0.0000
242 S B -0.0468
243 V B 0.0000
244 A B 0.0000
245 A B -0.3282
246 I B 0.0000
247 L B 0.0000
248 P B -0.4366
249 D B 0.0000
250 T B 0.0000
251 S B -0.4409
252 I B -0.1022
253 P B -0.3401
254 L B -0.4734
255 N B -1.6482
256 L B 0.0000
257 E B -1.6233
258 D B -2.1216
259 L B 0.0000
260 F B 0.0000
261 T B -0.5750
262 L B -0.3268
263 D B -1.2383
264 E B -0.9552
265 W B 0.0000
266 H B -1.1691
267 R B -1.2272
268 Y B 0.0000
269 W B 0.0000
270 Q B 0.0000
271 T B 0.0000
272 Q B -0.4137
273 N B 0.0000
274 L B 0.0000
275 R B -0.6946
276 Q B 0.0000
277 Y B 0.0000
278 M B 0.0000
279 S B 0.0000
280 K B -0.4579
281 S B 0.0000
282 S B 0.0000
283 A B 0.0000
284 P B -0.4082
285 V B -0.2993
286 G B 0.0000
287 K B -1.5218
288 M B -0.6905
289 L B 0.0000
290 P B 0.0000
291 V B 0.0000
292 A B 0.0000
293 I B 0.0000
294 A B 0.0000
295 W B -0.2487
296 P B 0.0000
297 L B 0.0000
298 L B 0.0000
299 S B 0.0000
300 E B -0.8783
301 F B 0.0000
302 I B 0.0000
303 R B -2.2625
304 S B -1.5288
305 A B 0.0000
306 Q B -1.7843
307 E B -2.5282
308 V B 0.0000
309 I B -0.9949
310 S B -1.3329
311 G B -1.9979
312 K B -2.6862
313 S B -2.2644
314 D B -2.5044
315 Y B -1.5323
316 Q B -0.8436
317 A B 0.0000
318 N B 0.0000
319 F B 0.0000
320 R B 0.0000
321 F B 0.0000
322 A B 0.0000
323 H B 0.0000
324 A B 0.0000
325 E B -0.7425
326 T B 0.0000
327 V B 0.0000
328 I B 0.0000
329 P B 0.0000
330 F B 0.0000
331 V B 0.0000
332 S B 0.0000
333 L B 0.0000
334 M B 0.0000
335 G B 0.0000
336 I B 0.0000
337 E B -0.9553
338 K B -1.0882
339 T B 0.0000
340 D B -0.8141
341 V B 0.0000
342 Q B -0.5513
343 V B 0.0000
344 C B -0.1507
345 R B -1.6642
346 P B -0.7309
347 D B -0.6404
348 S B -0.1190
349 V B 0.0000
350 S B 0.4681
351 V B 1.6964
352 Y B 0.7330
353 W B 0.0000
354 K B -0.7068
355 D B 0.0000
356 Y B -1.0582
357 E B -1.9131
358 I B 0.0000
359 S B 0.0000
360 P B 0.0000
361 M B 0.0000
362 A B 0.0000
363 A B 0.0000
364 N B 0.0000
365 V B 0.0000
366 Q B 0.0000
367 W B 0.0000
368 L B 0.0000
369 F B 0.0000
370 Y B 0.0000
371 R B -2.8280
372 D B -3.1877
373 R B -3.8397
374 D B -4.0752
375 Q B -3.8880
376 R B -3.4280
377 I B -1.5764
378 W B -0.8671
379 V B 0.0000
380 K B -0.2945
381 I B 0.0000
382 L B 0.0000
383 L B -0.7809
384 N B 0.0000
385 E B -1.2656
386 E B -1.9820
387 A B -1.0418
388 A B 0.0000
389 A B -0.5055
390 L B 0.0000
391 P B -0.1069
392 I B 0.0617
393 S B -0.2281
394 T B -0.0920
395 A B -0.1441
396 C B -0.1024
397 F B 0.0000
398 P B -0.2980
399 Y B 0.1568
400 Y B 0.0000
401 S B -0.8305
402 W B 0.0000
403 E B -1.0925
404 K B -0.9250
405 T B 0.0000
406 R B -0.5231
407 I B 0.6985
408 F B -0.0009
409 F B 0.0000
410 N B -1.0824
411 Q B -1.7216
412 R B -1.4721
413 I B 0.0000
414 E B -3.0696
415 M B -1.9893
416 A B 0.0000
417 K B -2.1470
418 K B -2.1419
419 T B -1.0514
420 L B -0.4633
421 S B -0.2622
422 V B 1.1295
423 F B 0.1470
424 N B -0.8617
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Laboratory of Theory of Biopolymers 2018