Project name: MEF [mutate: VA111A, YS5A, VS45A, ST46A, IY47A, AS48A, LT53A, VT56A, YT67A, CV68A, AY104A, VS105A] [mutate: YA47A, VR68A, YG104A]

Status: done

Started: 2025-12-20 12:44:56
Settings
Chain sequence(s) A: APKTSCEELKGTDTGQGGGGSATSSTPREAPYEGGGGSKQTGQQSTYSPNAGTDPTNGGGGSAPKTTVEELKGTDTGQGGGGSATSSTPREAPYEGGGGSDNAYSDASSGAEAAAG
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues YA47A,YG104A,VR68A
Energy difference between WT (input) and mutated protein (by FoldX) -0.984045 kcal/mol
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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       FoldX:    Building mutant model                                                       (00:00:15)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:23)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:38)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:39)
Show buried residues

Minimal score value
-3.4113
Maximal score value
-0.1108
Average score
-1.4591
Total score value
-169.2612

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A A -0.5077
2 P A -1.0968
3 K A -1.8142
4 T A -1.0879
5 S A -1.1525
6 C A -0.7643
7 E A -2.2130
8 E A -2.3336
9 L A -0.6684
10 K A -2.2768
11 G A -1.7295
12 T A -1.4929
13 D A -2.6021
14 T A -1.6686
15 G A -1.9209
16 Q A -2.0925
17 G A -1.6450
18 G A -1.4482
19 G A -1.2021
20 G A -0.8935
21 S A -0.6313
22 A A -0.3612
23 T A -0.3148
24 S A -0.4075
25 S A -0.6732
26 T A -0.9905
27 P A -1.6576
28 R A -2.9141
29 E A -2.6685
30 A A -1.1826
31 P A -0.5477
32 Y A -0.1108
33 E A -1.6472
34 G A -1.3318
35 G A -1.3852
36 G A -1.5432
37 G A -1.5958
38 S A -1.8042
39 K A -2.6931
40 Q A -2.6178
41 T A -1.9238
42 G A -1.9465
43 Q A -2.2592
44 Q A -2.1356
45 S A -1.2370
46 T A -0.6832
47 A A -0.5022 mutated: YA47A
48 S A -0.7165
49 P A -1.0346
50 N A -1.5261
51 A A -1.1183
52 G A -1.2773
53 T A -1.1963
54 D A -2.2265
55 P A -1.6406
56 T A -1.3465
57 N A -1.9675
58 G A -1.5805
59 G A -1.3746
60 G A -1.2241
61 G A -1.0025
62 S A -0.8080
63 A A -0.8595
64 P A -1.1839
65 K A -2.1236
66 T A -1.7250
67 T A -2.3410
68 R A -3.2351 mutated: VR68A
69 E A -3.4113
70 E A -3.0740
71 L A -1.1299
72 K A -2.3036
73 G A -1.6802
74 T A -1.4849
75 D A -2.5498
76 T A -1.6751
77 G A -1.8430
78 Q A -2.0974
79 G A -1.6054
80 G A -1.5093
81 G A -1.2271
82 G A -0.9039
83 S A -0.6348
84 A A -0.3667
85 T A -0.3536
86 S A -0.4207
87 S A -0.7589
88 T A -1.1791
89 P A -1.8090
90 R A -2.9097
91 E A -2.5674
92 A A -1.4399
93 P A -1.0405
94 Y A -0.2550
95 E A -1.6337
96 G A -1.3696
97 G A -1.2543
98 G A -1.2792
99 G A -1.4807
100 S A -1.7590
101 D A -2.6054
102 N A -2.3408
103 A A -1.5048
104 G A -1.3591 mutated: YG104A
105 S A -1.5099
106 D A -2.0806
107 A A -1.2047
108 S A -0.9351
109 S A -0.9684
110 G A -1.0658
111 A A -1.1250
112 E A -1.8945
113 A A -0.8280
114 A A -0.3829
115 A A -0.1412
116 G A -0.4242
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Laboratory of Theory of Biopolymers 2018