Project name: query_structure

Status: done

Started: 2026-03-16 22:57:06
Settings
Chain sequence(s) A: CANMVNMGPVANMVNMGPVANMVNMGPVCANMVNMGPV
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:06)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:07)
Show buried residues

Minimal score value
-0.5838
Maximal score value
1.7661
Average score
0.6531
Total score value
24.8193

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 C A 0.6878
2 A A 0.5296
3 N A -0.5838
4 M A 0.5744
5 V A 1.2398
6 N A -0.0512
7 M A 0.9703
8 G A 0.4363
9 P A 0.4393
10 V A 1.6245
11 A A 0.9344
12 N A -0.1456
13 M A 0.9408
14 V A 1.3634
15 N A -0.0186
16 M A 0.8574
17 G A 0.4525
18 P A 0.6191
19 V A 1.6831
20 A A 0.7899
21 N A -0.0598
22 M A 1.1964
23 V A 1.3818
24 N A -0.0404
25 M A 0.5370
26 G A -0.1000
27 P A 0.2135
28 V A 1.0415
29 C A 1.0469
30 A A 0.5696
31 N A -0.2043
32 M A 0.9083
33 V A 1.2383
34 N A -0.1130
35 M A 1.1728
36 G A 0.3645
37 P A 0.5567
38 V A 1.7661
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Laboratory of Theory of Biopolymers 2018