Project name: rfab4_nb2

Status: done

Started: 2025-08-12 06:24:51
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Chain sequence(s) A: QVQLVESGGGLVQPGGSLRLSCAASGPSGFDFSQYSLGWFRQAPGQGLEAVAAISADGKYTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAASTIDSSNFTNPANYEYWGQGTLVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:10)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:11)
Show buried residues

Minimal score value
-2.9194
Maximal score value
1.708
Average score
-0.6726
Total score value
-86.0918

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.5329
2 V A -1.1338
3 Q A -1.2353
4 L A 0.0000
5 V A 0.8099
6 E A 0.3392
7 S A -0.1966
8 G A -0.7059
9 G A 0.1148
10 G A 0.7104
11 L A 1.4242
12 V A -0.0840
13 Q A -1.4421
14 P A -1.8252
15 G A -1.5605
16 G A -1.0584
17 S A -1.3143
18 L A -0.8995
19 R A -2.1309
20 L A 0.0000
21 S A -0.4535
22 C A 0.0000
23 A A -0.2325
24 A A 0.0000
25 S A -1.0217
26 G A -1.2840
27 P A -1.0905
28 S A -0.8013
29 G A -0.7859
30 F A -0.9598
31 D A -1.6452
32 F A 0.0000
33 S A -1.7559
34 Q A -1.8704
35 Y A -0.8924
36 S A 0.0000
37 L A 0.0000
38 G A 0.0000
39 W A 0.0000
40 F A 0.0000
41 R A 0.0000
42 Q A -0.7604
43 A A -1.0148
44 P A -1.0031
45 G A -1.2797
46 Q A -1.8267
47 G A -1.1694
48 L A -0.3921
49 E A -0.9796
50 A A 0.0000
51 V A 0.0000
52 A A 0.0000
53 A A 0.0000
54 I A 0.0000
55 S A 0.0000
56 A A -1.6672
57 D A -2.5922
58 G A -1.7075
59 K A -1.7209
60 Y A 0.1102
61 T A 0.2846
62 Y A 0.0144
63 Y A -0.7587
64 A A 0.0000
65 D A -2.4509
66 S A -1.7537
67 V A 0.0000
68 K A -2.5859
69 G A -1.7536
70 R A -1.5237
71 F A 0.0000
72 T A -0.8125
73 I A 0.0000
74 S A -0.4129
75 R A -1.1580
76 D A -1.8848
77 N A -2.3988
78 S A -1.8186
79 K A -2.5169
80 N A -1.9892
81 T A 0.0000
82 L A 0.0000
83 Y A -0.6378
84 L A 0.0000
85 Q A -1.2785
86 M A 0.0000
87 N A -1.5307
88 S A -1.4116
89 L A 0.0000
90 R A -2.9194
91 A A -2.0219
92 E A -2.4562
93 D A 0.0000
94 T A -0.5112
95 A A 0.0000
96 V A 0.7840
97 Y A 0.0000
98 Y A 0.2835
99 C A 0.0000
100 A A 0.0000
101 A A 0.0000
102 S A 0.0000
103 T A -0.1042
104 I A 0.3796
105 D A -1.5601
106 S A -1.0252
107 S A -0.9283
108 N A -1.7325
109 F A 0.0000
110 T A -1.0645
111 N A -1.4196
112 P A -0.8071
113 A A -0.5886
114 N A -0.7804
115 Y A 0.0000
116 E A -0.6562
117 Y A -0.4242
118 W A 0.0371
119 G A -0.1737
120 Q A -0.9313
121 G A 0.0174
122 T A 0.5778
123 L A 1.7080
124 V A 0.0000
125 T A 0.3342
126 V A 0.0000
127 S A -0.7348
128 S A -0.4788
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Laboratory of Theory of Biopolymers 2018