Project name: query_structure

Status: done

Started: 2026-03-17 00:40:08
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Chain sequence(s) A: QVQLVESGGGLVQAGGSLRLSCAASGFPVMENSMYWYRQAPGKEREWVAAITSQGSWTWYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCHVSVGTNYTGQGTQVTVS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:18)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:18)
Show buried residues

Minimal score value
-3.9509
Maximal score value
1.0505
Average score
-0.7825
Total score value
-89.1995

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.5075
2 V A -0.9257
3 Q A -1.0772
4 L A 0.0000
5 V A 0.9927
6 E A 0.0000
7 S A -0.5856
8 G A -1.0551
9 G A -0.8251
10 G A -0.0734
11 L A 1.0147
12 V A 0.0110
13 Q A -1.2206
14 A A -1.3986
15 G A -1.3220
16 G A -0.8803
17 S A -1.2168
18 L A -0.9317
19 R A -2.1474
20 L A 0.0000
21 S A -0.3964
22 C A 0.0000
23 A A -0.1108
24 A A 0.0000
25 S A -0.7231
26 G A -1.0414
27 F A -0.6202
28 P A -1.0707
29 V A 0.0000
30 M A -1.6795
31 E A -2.1470
32 N A -1.0832
33 S A -0.4368
34 M A 0.0000
35 Y A 0.4741
36 W A 0.0000
37 Y A -0.2486
38 R A 0.0000
39 Q A -2.3451
40 A A -2.2036
41 P A -1.5386
42 G A -2.0732
43 K A -3.5556
44 E A -3.9509
45 R A -3.5075
46 E A -2.0599
47 W A -0.4862
48 V A 0.0000
49 A A 0.0000
50 A A 0.0000
51 I A 0.0000
52 T A -0.2138
53 S A -1.1800
54 Q A -1.8540
55 G A -1.0016
56 S A -0.0728
57 W A 1.0505
58 T A 1.0107
59 W A 0.9923
60 Y A -0.3215
61 A A 0.0000
62 D A -2.2816
63 S A -1.7327
64 V A 0.0000
65 K A -2.4679
66 G A -1.7754
67 R A -1.4631
68 F A 0.0000
69 T A -0.7268
70 I A 0.0000
71 S A -0.5588
72 R A -1.3575
73 D A -2.0694
74 N A -2.6414
75 A A -1.6794
76 K A -2.4517
77 N A -1.7308
78 T A 0.0000
79 V A 0.0000
80 Y A -0.6749
81 L A 0.0000
82 Q A -1.2460
83 M A 0.0000
84 N A -1.4416
85 S A -1.2075
86 L A 0.0000
87 K A -2.2423
88 P A -1.9063
89 E A -2.3256
90 D A 0.0000
91 T A -0.9595
92 A A 0.0000
93 V A -0.6672
94 Y A 0.0000
95 Y A -0.2055
96 C A 0.0000
97 H A 0.0000
98 V A 0.0000
99 S A -0.5253
100 V A -0.3389
101 G A -0.5574
102 T A -0.6822
103 N A -1.2129
104 Y A -0.6469
105 T A -0.3704
106 G A -0.2715
107 Q A -1.0229
108 G A 0.0000
109 T A 0.0000
110 Q A -1.1674
111 V A 0.0000
112 T A -0.3077
113 V A 0.0000
114 S A -0.7401
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Laboratory of Theory of Biopolymers 2018