Project name: obj1 [mutate: WR110C, GC113C, TG117C]

Status: done

Started: 2025-02-10 12:58:05
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Chain sequence(s) C: EVQLVESGGGLVQPGGSLRLSCAASDFTFRSYEMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAIYYCARLRDGFNKGFDYWGQGTLVTVSS
input PDB
Selected Chain(s) C
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues TG117C,GC113C,WR110C
Energy difference between WT (input) and mutated protein (by FoldX) 9.61974 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with C chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:24)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:50)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:12)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:13)
Show buried residues

Minimal score value
-3.2343
Maximal score value
1.6959
Average score
-0.6982
Total score value
-83.7899

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E C -2.0054
2 V C -1.2415
3 Q C -1.6796
4 L C 0.0000
5 V C 0.2922
6 E C 0.0525
7 S C -0.3674
8 G C -0.8261
9 G C -0.0239
10 G C 0.8278
11 L C 1.3850
12 V C -0.0884
13 Q C -1.3560
14 P C -1.4994
15 G C -1.4171
16 G C -0.9855
17 S C -1.2358
18 L C -0.9748
19 R C -2.1462
20 L C 0.0000
21 S C -0.5418
22 C C 0.0000
23 A C -0.1957
24 A C 0.0000
25 S C -0.2017
26 D C 0.0000
27 F C 1.5458
28 T C 0.2525
29 F C 0.0000
30 R C -2.0325
31 S C -0.8863
32 Y C -1.2160
33 E C -1.0755
34 M C 0.0000
35 S C 0.0000
36 W C 0.0000
37 V C 0.0000
38 R C 0.0000
39 Q C -0.3268
40 A C -1.0357
41 P C -1.3395
42 G C -1.4252
43 K C -2.1104
44 G C -0.9978
45 L C 0.4933
46 E C -0.3292
47 W C 0.3634
48 V C 0.0000
49 S C 0.0000
50 A C 0.0000
51 I C 0.0000
52 S C -0.5831
53 G C -1.2447
54 S C -1.2286
55 G C -1.0817
56 G C -0.7345
57 S C -0.3025
58 T C 0.1989
59 Y C 0.6077
60 Y C -0.3562
61 A C -1.1390
62 D C -2.3443
63 S C -1.7150
64 V C 0.0000
65 K C -2.3847
66 G C -1.6175
67 R C 0.0000
68 F C 0.0000
69 T C -0.6722
70 I C 0.0000
71 S C -0.5624
72 R C -1.3626
73 D C -1.9805
74 N C -2.1901
75 S C -1.7905
76 K C -2.3163
77 N C -1.6491
78 T C 0.0000
79 L C 0.0000
80 Y C -0.6696
81 L C 0.0000
82 Q C -1.2337
83 M C 0.0000
84 N C -1.3327
85 S C -1.2322
86 L C 0.0000
87 R C -2.4813
88 A C -1.9024
89 E C -2.3518
90 D C 0.0000
91 T C -0.5073
92 A C 0.0000
93 I C 0.9079
94 Y C 0.0000
95 Y C 0.1256
96 C C 0.0000
97 A C 0.0000
98 R C 0.0000
99 L C 0.0000
100 R C -2.9677
101 D C -3.2343
102 G C -2.0119
103 F C -1.1504
104 N C -2.3475
105 K C -3.0491
106 G C -1.5987
107 F C -0.8413
108 D C -1.3579
109 Y C -1.2499
110 R C -1.8213 mutated: WR110C
111 G C 0.0000
112 Q C -1.3381
113 C C -0.0584 mutated: GC113C
114 T C 0.6445
115 L C 1.6959
116 V C 0.0000
117 G C 0.2299 mutated: TG117C
118 V C 0.0000
119 S C -0.7910
120 S C -1.0676
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Laboratory of Theory of Biopolymers 2018