| Chain sequence(s) |
A: RSVCRQIKICRRRGGCYYKCTNRPY
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:16)
[INFO] Main: Simulation completed successfully. (00:00:16)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | R | A | -1.5541 | |
| 2 | S | A | -0.5429 | |
| 3 | V | A | 0.6020 | |
| 4 | C | A | -1.1008 | |
| 5 | R | A | -2.2350 | |
| 6 | Q | A | -1.8388 | |
| 7 | I | A | -0.7086 | |
| 8 | K | A | -0.4857 | |
| 9 | I | A | 0.1921 | |
| 10 | C | A | -0.5742 | |
| 11 | R | A | -2.8386 | |
| 12 | R | A | -3.5861 | |
| 13 | R | A | -3.4628 | |
| 14 | G | A | -2.0529 | |
| 15 | G | A | -1.2138 | |
| 16 | C | A | 0.1849 | |
| 17 | Y | A | 1.2374 | |
| 18 | Y | A | 0.9630 | |
| 19 | K | A | -0.2600 | |
| 20 | C | A | -0.9064 | |
| 21 | T | A | -1.5486 | |
| 22 | N | A | -2.2084 | |
| 23 | R | A | -2.3078 | |
| 24 | P | A | -0.7669 | |
| 25 | Y | A | 0.4486 |