Project name: query_structure

Status: done

Started: 2026-03-17 00:59:45
Settings
Chain sequence(s) A: RSVCRQIKICRRRGGCYYKCTNRPY
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:16)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:16)
Show buried residues

Minimal score value
-3.5861
Maximal score value
1.2374
Average score
-1.0626
Total score value
-26.5644

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 R A -1.5541
2 S A -0.5429
3 V A 0.6020
4 C A -1.1008
5 R A -2.2350
6 Q A -1.8388
7 I A -0.7086
8 K A -0.4857
9 I A 0.1921
10 C A -0.5742
11 R A -2.8386
12 R A -3.5861
13 R A -3.4628
14 G A -2.0529
15 G A -1.2138
16 C A 0.1849
17 Y A 1.2374
18 Y A 0.9630
19 K A -0.2600
20 C A -0.9064
21 T A -1.5486
22 N A -2.2084
23 R A -2.3078
24 P A -0.7669
25 Y A 0.4486
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Laboratory of Theory of Biopolymers 2018