Project name: Guselkumab

Status: done

Started: 2026-04-12 04:34:07
Settings
Chain sequence(s) H: EVQLVQSGAEVKKPGESLKISCKGSGYSFSNYWIGWVRQMPGKGLEWMGIIDPSNSYTRYSPSFQGQVTISADKSISTAYLQWSSLKASDTAMYYCARWYYKPFDVWGQGTLVTVSS
L: QSVLTQPPSVSGAPGQRVTISCTGSSSNIGSGYDVHWYQQLPGTAPKLLIYGNSKRPSGVPDRFSGSKSGTSASLAITGLQSEDEADYYCASWTDGLSLVVFGGGTKLTVL
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:49)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:50)
Show buried residues

Minimal score value
-2.5563
Maximal score value
1.2896
Average score
-0.4958
Total score value
-113.0428

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -1.9003
2 V H -0.7871
3 Q H -1.3118
4 L H 0.0000
5 V H 0.1236
6 Q H 0.0000
7 S H -0.4554
8 G H -0.5188
9 A H 0.1645
11 E H 0.2848
12 V H 1.1147
13 K H -0.7854
14 K H -2.1336
15 P H -1.8934
16 G H -1.7284
17 E H -1.9575
18 S H -1.4298
19 L H 0.0000
20 K H -1.2951
21 I H 0.0000
22 S H -0.3980
23 C H 0.0000
24 K H -0.6996
25 G H 0.0000
26 S H -0.6824
27 G H -1.0684
28 Y H -0.6126
29 S H -0.6863
30 F H 0.0000
35 S H -1.4422
36 N H -1.1161
37 Y H 0.1014
38 W H 0.5079
39 I H 0.0000
40 G H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.5609
45 M H -0.5280
46 P H -0.7919
47 G H -1.3396
48 K H -2.0939
49 G H -1.3302
50 L H 0.0000
51 E H -0.7693
52 W H 0.0000
53 M H 0.0000
54 G H 0.0000
55 I H 0.0000
56 I H 0.0000
57 D H -0.5370
58 P H 0.0000
59 S H -1.3220
62 N H -1.4013
63 S H -0.6835
64 Y H 0.5811
65 T H 0.1237
66 R H -0.3775
67 Y H -0.6983
68 S H 0.0000
69 P H -0.9315
70 S H -1.0336
71 F H 0.0000
72 Q H -1.9362
74 G H -1.6522
75 Q H -1.9296
76 V H 0.0000
77 T H -0.8550
78 I H 0.0000
79 S H -0.3659
80 A H -0.7517
81 D H -1.3208
82 K H -1.9807
83 S H -0.4411
84 I H 0.6708
85 S H -0.4959
86 T H 0.0000
87 A H 0.0000
88 Y H -0.3989
89 L H 0.0000
90 Q H -1.0980
91 W H 0.0000
92 S H -1.0351
93 S H -1.3747
94 L H 0.0000
95 K H -1.3447
96 A H -0.8579
97 S H -0.4036
98 D H 0.0000
99 T H 0.0707
100 A H 0.0000
101 M H 0.2848
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 W H 0.5003
108 Y H 1.0013
109 Y H 1.1428
113 K H -0.4109
114 P H 0.0000
115 F H 0.0000
116 D H -0.1635
117 V H -0.1370
118 W H -0.2737
119 G H 0.0000
120 Q H -0.9973
121 G H 0.0000
122 T H 0.0000
123 L H 0.5550
124 V H 0.0000
125 T H 0.2868
126 V H 0.0000
127 S H -0.7224
128 S H -1.0290
1 Q L -1.1650
2 S L -0.5871
3 V L 0.2659
4 L L 0.0000
5 T L -0.1592
6 Q L -0.4283
7 P L -0.4813
8 P L -0.6941
9 S L -0.6065
11 V L -0.1607
12 S L -0.1580
13 G L 0.0000
14 A L -0.2605
15 P L -0.9577
16 G L -1.7234
17 Q L -2.2709
18 R L -2.5563
19 V L -1.0730
20 T L -0.4084
21 I L 0.0000
22 S L -0.2806
23 C L 0.0000
24 T L -0.2427
25 G L -0.1706
26 S L -0.2772
27 S L -0.5863
28 S L -0.5405
29 N L 0.0000
30 I L 0.0000
31 G L -0.8737
35 S L -0.7385
36 G L -0.6072
37 Y L -0.3609
38 D L -0.5101
39 V L 0.0000
40 H L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L -0.6502
45 L L -0.5737
46 P L -0.4971
47 G L -0.5245
48 T L -0.5956
49 A L -0.6159
50 P L 0.0000
51 K L -0.9866
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L -0.6318
56 G L -0.8083
57 N L -0.9163
65 S L -1.2944
66 K L -2.0917
67 R L -2.0083
68 P L -1.0157
69 S L -0.8201
70 G L -0.8613
71 V L -1.0542
72 P L -1.3051
74 D L -2.1516
75 R L -1.4688
76 F L 0.0000
77 S L -1.1187
78 G L 0.0000
79 S L -0.8331
80 K L -1.0165
83 S L -0.8096
84 G L -0.9351
85 T L -0.7552
86 S L -0.6214
87 A L 0.0000
88 S L -0.4198
89 L L 0.0000
90 A L -0.5054
91 I L 0.0000
92 T L -1.7808
93 G L -1.7170
94 L L 0.0000
95 Q L -1.6051
96 S L -1.3847
97 E L -2.2604
98 D L 0.0000
99 E L -1.4580
100 A L 0.0000
101 D L -0.9247
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 A L 0.0000
106 S L 0.0000
107 W L -0.2289
108 T L 0.0000
109 D L -1.2356
110 G L -0.7542
113 L L -0.0068
114 S L -0.4453
115 L L 0.0000
116 V L 0.0000
117 V L 0.0000
118 F L 0.0000
119 G L 0.0000
120 G L -1.0764
121 G L 0.0000
122 T L 0.0000
123 K L -1.2184
124 L L 0.0000
125 T L -0.0048
126 V L 0.0298
127 L L 1.2896
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018