| Chain sequence(s) |
L: YPVPTTTPFPQLAGDY
input PDB |
| Selected Chain(s) | L |
| Distance of aggregation | 5 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with L chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:04)
[INFO] Main: Simulation completed successfully. (00:00:05)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 0 | Y | L | 1.5035 | |
| 1 | P | L | 0.2960 | |
| 2 | V | L | 1.6815 | |
| 3 | P | L | 0.0421 | |
| 4 | T | L | -0.1213 | |
| 5 | T | L | 0.1631 | |
| 6 | T | L | -0.0805 | |
| 7 | P | L | 0.2194 | |
| 8 | F | L | 1.7288 | |
| 9 | P | L | -0.0626 | |
| 10 | Q | L | -0.7675 | |
| 11 | L | L | 1.6032 | |
| 12 | A | L | 0.5077 | |
| 13 | G | L | -0.4382 | |
| 14 | D | L | -1.5124 | |
| 15 | Y | L | 1.1441 |