| Chain sequence(s) |
A: QVQLVESGGGLVQAGGSLRLSCAASGSTFSRYALAWYRQTPGKQREWVATITSGGVTSYVDSVKGRFTVSRDNAANTVYLQMISLKPEDTAVYYCKAPEILSPWGQGTQVTVSSGGGGSGGGGSGGGGSQVQLVESGGGLVQPGGSLRLSCAASGFTRDAYAIGWFRQAPGKEREGVSCISASGSRTNYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAIYYCAATEFGTGYVCYGGLEGNEFSFWGQGTQVTVSS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:03:52)
[INFO] Main: Simulation completed successfully. (00:03:54)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.2274 | |
| 2 | V | A | -0.3439 | |
| 3 | Q | A | -0.6037 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.0000 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.6475 | |
| 8 | G | A | -0.9749 | |
| 9 | G | A | -0.7152 | |
| 10 | G | A | -0.4282 | |
| 11 | L | A | -0.0748 | |
| 12 | V | A | -0.5492 | |
| 13 | Q | A | -1.6335 | |
| 14 | A | A | -1.5385 | |
| 15 | G | A | -1.0123 | |
| 16 | G | A | -0.5886 | |
| 17 | S | A | -0.5597 | |
| 18 | L | A | -0.7561 | |
| 19 | R | A | -1.9282 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.5711 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.2161 | |
| 24 | A | A | -0.3516 | |
| 25 | S | A | -0.6484 | |
| 26 | G | A | -0.8589 | |
| 27 | S | A | -0.9320 | |
| 28 | T | A | -0.8420 | |
| 29 | F | A | 0.0000 | |
| 30 | S | A | -1.7586 | |
| 31 | R | A | -2.3104 | |
| 32 | Y | A | -1.1829 | |
| 33 | A | A | -0.6633 | |
| 34 | L | A | 0.0000 | |
| 35 | A | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | Y | A | -0.3855 | |
| 38 | R | A | -1.0676 | |
| 39 | Q | A | -1.6896 | |
| 40 | T | A | -1.8043 | |
| 41 | P | A | -1.2997 | |
| 42 | G | A | -1.7914 | |
| 43 | K | A | -3.0054 | |
| 44 | Q | A | -2.8034 | |
| 45 | R | A | -2.1932 | |
| 46 | E | A | -1.8807 | |
| 47 | W | A | -0.4583 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | T | A | 0.2323 | |
| 51 | I | A | 0.0000 | |
| 52 | T | A | -0.0866 | |
| 53 | S | A | -1.0509 | |
| 54 | G | A | -0.6027 | |
| 55 | G | A | 0.0461 | |
| 56 | V | A | 1.3507 | |
| 57 | T | A | 0.5471 | |
| 58 | S | A | -0.1365 | |
| 59 | Y | A | -0.8161 | |
| 60 | V | A | -1.1459 | |
| 61 | D | A | -2.3417 | |
| 62 | S | A | -1.6866 | |
| 63 | V | A | 0.0000 | |
| 64 | K | A | -2.5666 | |
| 65 | G | A | -1.5396 | |
| 66 | R | A | -0.9217 | |
| 67 | F | A | 0.0000 | |
| 68 | T | A | -0.7216 | |
| 69 | V | A | 0.0000 | |
| 70 | S | A | -0.4679 | |
| 71 | R | A | -1.2386 | |
| 72 | D | A | -1.7193 | |
| 73 | N | A | -2.2486 | |
| 74 | A | A | -0.9907 | |
| 75 | A | A | -0.8497 | |
| 76 | N | A | -1.4555 | |
| 77 | T | A | -0.8325 | |
| 78 | V | A | 0.0000 | |
| 79 | Y | A | -0.6371 | |
| 80 | L | A | 0.0000 | |
| 81 | Q | A | -1.0509 | |
| 82 | M | A | 0.0000 | |
| 83 | I | A | 0.0870 | |
| 84 | S | A | -0.3582 | |
| 85 | L | A | 0.0000 | |
| 86 | K | A | -1.8252 | |
| 87 | P | A | -1.7655 | |
| 88 | E | A | -2.2189 | |
| 89 | D | A | 0.0000 | |
| 90 | T | A | -0.8891 | |
| 91 | A | A | 0.0000 | |
| 92 | V | A | -0.1747 | |
| 93 | Y | A | 0.0000 | |
| 94 | Y | A | -0.1438 | |
| 95 | C | A | 0.0000 | |
| 96 | K | A | -0.0670 | |
| 97 | A | A | 0.0000 | |
| 98 | P | A | -0.6540 | |
| 99 | E | A | -1.5560 | |
| 100 | I | A | 0.1751 | |
| 101 | L | A | 1.2888 | |
| 102 | S | A | 0.0000 | |
| 103 | P | A | 0.1821 | |
| 104 | W | A | 0.3677 | |
| 105 | G | A | 0.0000 | |
| 106 | Q | A | -0.5988 | |
| 107 | G | A | 0.0000 | |
| 108 | T | A | 0.0000 | |
| 109 | Q | A | -0.6555 | |
| 110 | V | A | 0.0000 | |
| 111 | T | A | -0.6089 | |
| 112 | V | A | 0.0000 | |
| 113 | S | A | -1.1196 | |
| 114 | S | A | -1.3789 | |
| 115 | G | A | -1.3687 | |
| 116 | G | A | -1.2586 | |
| 117 | G | A | -1.1861 | |
| 118 | G | A | -1.1873 | |
| 119 | S | A | -1.0538 | |
| 120 | G | A | -1.1369 | |
| 121 | G | A | -1.1827 | |
| 122 | G | A | -1.1571 | |
| 123 | G | A | -1.1488 | |
| 124 | S | A | -0.9819 | |
| 125 | G | A | -1.1331 | |
| 126 | G | A | -1.1546 | |
| 127 | G | A | -1.2621 | |
| 128 | G | A | -1.2339 | |
| 129 | S | A | -1.2036 | |
| 130 | Q | A | -1.4734 | |
| 131 | V | A | -0.4507 | |
| 132 | Q | A | -0.5383 | |
| 133 | L | A | 0.0000 | |
| 134 | V | A | -0.0117 | |
| 135 | E | A | 0.0000 | |
| 136 | S | A | -0.5663 | |
| 137 | G | A | -1.0270 | |
| 138 | G | A | -0.5866 | |
| 139 | G | A | -0.3127 | |
| 140 | L | A | 0.0644 | |
| 141 | V | A | -0.4617 | |
| 142 | Q | A | -1.4928 | |
| 143 | P | A | -1.6657 | |
| 144 | G | A | -1.3985 | |
| 145 | G | A | -1.0094 | |
| 146 | S | A | -1.1589 | |
| 147 | L | A | -0.9964 | |
| 148 | R | A | -2.0803 | |
| 149 | L | A | 0.0000 | |
| 150 | S | A | -0.5620 | |
| 151 | C | A | 0.0000 | |
| 152 | A | A | -0.4325 | |
| 153 | A | A | 0.0000 | |
| 154 | S | A | -0.9155 | |
| 155 | G | A | -0.9065 | |
| 156 | F | A | -1.1380 | |
| 157 | T | A | -1.3958 | |
| 158 | R | A | -2.9758 | |
| 159 | D | A | -2.6872 | |
| 160 | A | A | -1.2629 | |
| 161 | Y | A | -0.8010 | |
| 162 | A | A | 0.0000 | |
| 163 | I | A | 0.0000 | |
| 164 | G | A | 0.0000 | |
| 165 | W | A | 0.0000 | |
| 166 | F | A | 0.0000 | |
| 167 | R | A | 0.0000 | |
| 168 | Q | A | -2.0161 | |
| 169 | A | A | -1.9276 | |
| 170 | P | A | -1.3907 | |
| 171 | G | A | -1.9784 | |
| 172 | K | A | -3.4246 | |
| 173 | E | A | -3.7692 | |
| 174 | R | A | -3.4239 | |
| 175 | E | A | -2.8804 | |
| 176 | G | A | -1.7528 | |
| 177 | V | A | 0.0000 | |
| 178 | S | A | 0.0000 | |
| 179 | C | A | 0.0000 | |
| 180 | I | A | 0.0000 | |
| 181 | S | A | -0.6812 | |
| 182 | A | A | -1.1932 | |
| 183 | S | A | -1.0015 | |
| 184 | G | A | -1.4268 | |
| 185 | S | A | -1.3368 | |
| 186 | R | A | -1.9206 | |
| 187 | T | A | -0.9169 | |
| 188 | N | A | -0.8102 | |
| 189 | Y | A | -1.0385 | |
| 190 | A | A | -1.5847 | |
| 191 | D | A | -2.5169 | |
| 192 | S | A | -1.8409 | |
| 193 | V | A | 0.0000 | |
| 194 | K | A | -2.6743 | |
| 195 | G | A | -1.7753 | |
| 196 | R | A | -1.4893 | |
| 197 | F | A | 0.0000 | |
| 198 | T | A | -0.8974 | |
| 199 | I | A | 0.0000 | |
| 200 | S | A | -0.7096 | |
| 201 | R | A | -1.0282 | |
| 202 | D | A | -1.4865 | |
| 203 | N | A | -2.1754 | |
| 204 | A | A | -1.7055 | |
| 205 | K | A | -2.3472 | |
| 206 | N | A | -2.0529 | |
| 207 | T | A | 0.0000 | |
| 208 | V | A | 0.0000 | |
| 209 | Y | A | -0.6495 | |
| 210 | L | A | 0.0000 | |
| 211 | Q | A | -1.2847 | |
| 212 | M | A | 0.0000 | |
| 213 | N | A | -1.4069 | |
| 214 | S | A | -1.2442 | |
| 215 | L | A | 0.0000 | |
| 216 | K | A | -2.4092 | |
| 217 | P | A | -1.9477 | |
| 218 | E | A | -2.3700 | |
| 219 | D | A | 0.0000 | |
| 220 | T | A | -0.8616 | |
| 221 | A | A | 0.0000 | |
| 222 | I | A | -0.0851 | |
| 223 | Y | A | 0.0000 | |
| 224 | Y | A | -0.3089 | |
| 225 | C | A | 0.0000 | |
| 226 | A | A | 0.0000 | |
| 227 | A | A | 0.0000 | |
| 228 | T | A | 0.0000 | |
| 229 | E | A | -1.1838 | |
| 230 | F | A | 0.7448 | |
| 231 | G | A | -0.0492 | |
| 232 | T | A | -0.0209 | |
| 233 | G | A | 0.4999 | |
| 234 | Y | A | 1.6083 | |
| 235 | V | A | 0.0000 | |
| 236 | C | A | 0.1379 | |
| 237 | Y | A | 1.1464 | |
| 238 | G | A | 0.1278 | |
| 239 | G | A | -0.5533 | |
| 240 | L | A | -1.2690 | |
| 241 | E | A | -2.8083 | |
| 242 | G | A | -2.1769 | |
| 243 | N | A | -2.1775 | |
| 244 | E | A | -1.7287 | |
| 245 | F | A | 0.0000 | |
| 246 | S | A | -0.4170 | |
| 247 | F | A | 0.4850 | |
| 248 | W | A | 0.4139 | |
| 249 | G | A | -0.1969 | |
| 250 | Q | A | -0.9957 | |
| 251 | G | A | 0.0000 | |
| 252 | T | A | 0.0000 | |
| 253 | Q | A | -0.3680 | |
| 254 | V | A | 0.0000 | |
| 255 | T | A | 0.0000 | |
| 256 | V | A | 0.0000 | |
| 257 | S | A | -0.9576 | |
| 258 | S | A | -0.6640 |