| Chain sequence(s) |
A: QVQLVESGGGLVQAGGSLLLSCAASGFPVSETYMEWYRQAPGKEREWVAAINSWGWYTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAVEVGEWYYGQGTQVTVS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:21)
[INFO] Main: Simulation completed successfully. (00:01:21)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.4168 | |
| 2 | V | A | -0.6029 | |
| 3 | Q | A | -1.1045 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.5207 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.2731 | |
| 8 | G | A | -0.1796 | |
| 9 | G | A | -0.3097 | |
| 10 | G | A | 0.1760 | |
| 11 | L | A | 0.9211 | |
| 12 | V | A | 0.0000 | |
| 13 | Q | A | -1.3305 | |
| 14 | A | A | -1.4761 | |
| 15 | G | A | -1.3785 | |
| 16 | G | A | -0.9318 | |
| 17 | S | A | -0.6155 | |
| 18 | L | A | 0.4844 | |
| 19 | L | A | 0.8220 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | 0.2499 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.2782 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.6900 | |
| 26 | G | A | -0.8865 | |
| 27 | F | A | -0.6436 | |
| 28 | P | A | -1.2596 | |
| 29 | V | A | 0.0000 | |
| 30 | S | A | -1.1454 | |
| 31 | E | A | -1.5286 | |
| 32 | T | A | -0.4542 | |
| 33 | Y | A | 0.7524 | |
| 34 | M | A | 0.0000 | |
| 35 | E | A | 0.1759 | |
| 36 | W | A | 0.0000 | |
| 37 | Y | A | -0.3650 | |
| 38 | R | A | -1.3694 | |
| 39 | Q | A | -2.3357 | |
| 40 | A | A | -2.1800 | |
| 41 | P | A | -1.5144 | |
| 42 | G | A | -2.0486 | |
| 43 | K | A | -3.5164 | |
| 44 | E | A | -3.8891 | |
| 45 | R | A | -3.3960 | |
| 46 | E | A | -1.9925 | |
| 47 | W | A | -0.5531 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | A | A | 0.8895 | |
| 51 | I | A | 0.0000 | |
| 52 | N | A | 1.1520 | |
| 53 | S | A | 0.3160 | |
| 54 | W | A | 1.2975 | |
| 55 | G | A | 0.9427 | |
| 56 | W | A | 2.0731 | |
| 57 | Y | A | 2.4543 | |
| 58 | T | A | 1.7412 | |
| 59 | Y | A | 1.2457 | |
| 60 | Y | A | -0.2250 | |
| 61 | A | A | -1.0182 | |
| 62 | D | A | -2.2650 | |
| 63 | S | A | -1.7675 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.4293 | |
| 66 | G | A | -1.7693 | |
| 67 | R | A | -1.4705 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -0.3346 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.4191 | |
| 72 | R | A | -1.1034 | |
| 73 | D | A | -1.9488 | |
| 74 | N | A | -2.4421 | |
| 75 | A | A | -1.7299 | |
| 76 | K | A | -2.4522 | |
| 77 | N | A | -1.8285 | |
| 78 | T | A | -1.1554 | |
| 79 | V | A | 0.0000 | |
| 80 | Y | A | 0.0624 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -0.0703 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.0192 | |
| 85 | S | A | -1.2343 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.4224 | |
| 88 | P | A | -2.0061 | |
| 89 | E | A | -2.3862 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -1.0382 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | -0.7752 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | -0.2746 | |
| 96 | C | A | 0.0000 | |
| 97 | A | A | 0.0000 | |
| 98 | V | A | 0.0000 | |
| 99 | E | A | -1.5777 | |
| 100 | V | A | -0.8296 | |
| 101 | G | A | -1.3558 | |
| 102 | E | A | -2.0332 | |
| 103 | W | A | -0.6532 | |
| 104 | Y | A | -0.1264 | |
| 105 | Y | A | 0.2664 | |
| 106 | G | A | -0.1603 | |
| 107 | Q | A | -1.0629 | |
| 108 | G | A | -0.6116 | |
| 109 | T | A | 0.0000 | |
| 110 | Q | A | -1.2194 | |
| 111 | V | A | 0.0000 | |
| 112 | T | A | -0.3895 | |
| 113 | V | A | 0.0000 | |
| 114 | S | A | -0.8162 |