| Chain sequence(s) |
A: GKGHKGH
C: GKGHKGH B: GKGHKGH E: GKGHKGH D: GKGHKGH G: GKGHKGH F: GKGHKGH H: GKGHKGH input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,H |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:03:10)
[INFO] Main: Simulation completed successfully. (00:03:13)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -1.8076 | |
| 2 | K | A | -2.7163 | |
| 3 | G | A | -2.7703 | |
| 4 | H | A | -2.6497 | |
| 5 | K | A | -2.2184 | |
| 6 | G | A | -1.3340 | |
| 7 | H | A | -1.5627 | |
| 1 | G | B | -2.0276 | |
| 2 | K | B | -3.2636 | |
| 3 | G | B | -2.8475 | |
| 4 | H | B | -2.8250 | |
| 5 | K | B | -2.7663 | |
| 6 | G | B | -1.6990 | |
| 7 | H | B | -1.7747 | |
| 1 | G | C | -2.2200 | |
| 2 | K | C | -2.8049 | |
| 3 | G | C | 0.0000 | |
| 4 | H | C | -2.7683 | |
| 5 | K | C | 0.0000 | |
| 6 | G | C | -1.8354 | |
| 7 | H | C | -2.0718 | |
| 1 | G | D | -2.2218 | |
| 2 | K | D | -2.7929 | |
| 3 | G | D | 0.0000 | |
| 4 | H | D | -2.4523 | |
| 5 | K | D | -2.2891 | |
| 6 | G | D | -1.8101 | |
| 7 | H | D | -2.1343 | |
| 1 | G | E | -1.8270 | |
| 2 | K | E | -2.6427 | |
| 3 | G | E | 0.0000 | |
| 4 | H | E | -2.9233 | |
| 5 | K | E | -2.6462 | |
| 6 | G | E | -1.8934 | |
| 7 | H | E | -1.8549 | |
| 1 | G | F | -2.0756 | |
| 2 | K | F | -3.0964 | |
| 3 | G | F | -2.8583 | |
| 4 | H | F | -2.9320 | |
| 5 | K | F | -2.6982 | |
| 6 | G | F | -2.1483 | |
| 7 | H | F | -1.8834 | |
| 1 | G | G | -2.0646 | |
| 2 | K | G | -2.8965 | |
| 3 | G | G | 0.0000 | |
| 4 | H | G | -2.6855 | |
| 5 | K | G | -2.3749 | |
| 6 | G | G | -1.9046 | |
| 7 | H | G | -2.1203 | |
| 1 | G | H | -1.9892 | |
| 2 | K | H | -2.5800 | |
| 3 | G | H | 0.0000 | |
| 4 | H | H | -2.1603 | |
| 5 | K | H | 0.0000 | |
| 6 | G | H | -1.5235 | |
| 7 | H | H | -1.8447 |