Chain sequence(s) |
H: QVQLVQSGAEVKKPGASVKVSCKASGYTFTDFYTHWVRQAPGQGLEWMGRINPKSGVTDYAQKFQGRVTMTRDTAISTAYMEVSRLRSDDTAVYYCARDFGIAAVGTDHDAFDIWGQGTMVTVSS
L: DIVMTQSPDSLAVSLGERATINCKSSQSVLYSSNNKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSTPPLTFGGGTKVEIK input PDB |
Selected Chain(s) | H,L |
Distance of aggregation | 10 Å |
FoldX usage | Yes |
Dynamic mode | No |
Automated mutations | No |
Mutated residues | AK111AH,IR110H,AG111H |
Energy difference between WT (input) and mutated protein (by FoldX) | -1.90924 kcal/mol |
Downloads | Download all the data |
Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00) [WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow to prevent this behavior) (00:00:00) [INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00) [INFO] runJob: Creating pdb object from: input.pdb (00:00:00) [WARNING] runJob: Mutation {"idx": "111", "chain": "A", "oldres": "A", "newres": "K"} likely tried to mutate a chain that doesn't exist. (00:00:00) [INFO] runJob: Available chains: [u'H', u'L'] (00:00:00) [WARNING] runJob: Could not find the requested mutation: {"idx": "111", "chain": "A", "oldres": "A", "newres": "K"} (00:00:00) [INFO] FoldX: Starting FoldX energy minimalization (00:00:00) [INFO] FoldX: Building mutant model (00:00:47) [INFO] FoldX: Starting FoldX energy minimalization (00:00:51) [INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:30) [INFO] Main: Simulation completed successfully. (00:01:31) |
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
residue index | residue name | chain | Aggrescan3D score | mutation |
---|---|---|---|---|
residue index | residue name | chain | Aggrescan3D score | |
1 | Q | H | -1.2160 | |
2 | V | H | -0.3893 | |
3 | Q | H | -0.5823 | |
4 | L | H | 0.0000 | |
5 | V | H | 0.2153 | |
6 | Q | H | 0.0000 | |
7 | S | H | -0.5503 | |
8 | G | H | -0.5605 | |
9 | A | H | 0.0311 | |
11 | E | H | -0.0650 | |
12 | V | H | 0.9318 | |
13 | K | H | -0.8876 | |
14 | K | H | -2.2972 | |
15 | P | H | -2.5060 | |
16 | G | H | -2.2714 | |
17 | A | H | -1.7412 | |
18 | S | H | -1.7564 | |
19 | V | H | 0.0000 | |
20 | K | H | -1.7126 | |
21 | V | H | 0.0000 | |
22 | S | H | -0.5851 | |
23 | C | H | 0.0000 | |
24 | K | H | -0.4685 | |
25 | A | H | 0.0000 | |
26 | S | H | -0.3670 | |
27 | G | H | -0.7281 | |
28 | Y | H | -0.4141 | |
29 | T | H | -0.4474 | |
30 | F | H | 0.0000 | |
35 | T | H | -1.5973 | |
36 | D | H | -2.2641 | |
37 | F | H | -1.1345 | |
38 | Y | H | -0.4644 | |
39 | T | H | 0.0000 | |
40 | H | H | 0.0000 | |
41 | W | H | 0.0000 | |
42 | V | H | 0.0000 | |
43 | R | H | 0.0000 | |
44 | Q | H | -0.5839 | |
45 | A | H | -0.9759 | |
46 | P | H | -0.9826 | |
47 | G | H | -1.2143 | |
48 | Q | H | -1.7508 | |
49 | G | H | -1.1313 | |
50 | L | H | 0.0000 | |
51 | E | H | -0.6831 | |
52 | W | H | 0.0000 | |
53 | M | H | 0.0000 | |
54 | G | H | 0.0000 | |
55 | R | H | 0.0000 | |
56 | I | H | 0.0000 | |
57 | N | H | -0.4823 | |
58 | P | H | 0.0000 | |
59 | K | H | -1.9589 | |
62 | S | H | -0.6689 | |
63 | G | H | -0.1941 | |
64 | V | H | 1.1119 | |
65 | T | H | 0.5343 | |
66 | D | H | -0.3284 | |
67 | Y | H | -1.0749 | |
68 | A | H | 0.0000 | |
69 | Q | H | -2.5518 | |
70 | K | H | -2.6952 | |
71 | F | H | 0.0000 | |
72 | Q | H | -2.4509 | |
74 | G | H | -1.7925 | |
75 | R | H | -1.8550 | |
76 | V | H | 0.0000 | |
77 | T | H | -0.8118 | |
78 | M | H | 0.0000 | |
79 | T | H | -0.3348 | |
80 | R | H | -0.6177 | |
81 | D | H | -0.2849 | |
82 | T | H | -0.2479 | |
83 | A | H | 0.7141 | |
84 | I | H | 1.4825 | |
85 | S | H | 0.3644 | |
86 | T | H | 0.0000 | |
87 | A | H | 0.0000 | |
88 | Y | H | -0.6677 | |
89 | M | H | 0.0000 | |
90 | E | H | -1.3299 | |
91 | V | H | 0.0000 | |
92 | S | H | -1.8399 | |
93 | R | H | -2.8292 | |
94 | L | H | 0.0000 | |
95 | R | H | -3.3707 | |
96 | S | H | -2.3287 | |
97 | D | H | -2.5297 | |
98 | D | H | 0.0000 | |
99 | T | H | -0.8371 | |
100 | A | H | 0.0000 | |
101 | V | H | 0.2786 | |
102 | Y | H | 0.0000 | |
103 | Y | H | 0.0000 | |
104 | C | H | 0.0000 | |
105 | A | H | 0.0000 | |
106 | R | H | 0.0000 | |
107 | D | H | 0.0000 | |
108 | F | H | 0.2117 | |
109 | G | H | -1.1213 | |
110 | R | H | -2.0360 | mutated: IR110H |
111 | G | H | -1.2468 | mutated: AG111H |
111A | A | H | -0.1800 | mutated: AK111AH |
111B | V | H | 0.9617 | |
112C | G | H | -0.1324 | |
112B | T | H | -0.7134 | |
112A | D | H | -1.5267 | |
112 | H | H | 0.0000 | |
113 | D | H | 0.0000 | |
114 | A | H | 0.0000 | |
115 | F | H | 0.0000 | |
116 | D | H | 0.0087 | |
117 | I | H | 0.1618 | |
118 | W | H | 0.0000 | |
119 | G | H | 0.0000 | |
120 | Q | H | -0.9728 | |
121 | G | H | -0.4518 | |
122 | T | H | 0.0000 | |
123 | M | H | 0.3508 | |
124 | V | H | 0.0000 | |
125 | T | H | -0.2568 | |
126 | V | H | 0.0000 | |
127 | S | H | -0.9920 | |
128 | S | H | -0.8319 | |
1 | D | L | -1.5861 | |
2 | I | L | 0.0000 | |
3 | V | L | 0.7349 | |
4 | M | L | 0.0000 | |
5 | T | L | -0.9149 | |
6 | Q | L | -1.4623 | |
7 | S | L | -1.5911 | |
8 | P | L | -1.4227 | |
9 | D | L | -2.3402 | |
10 | S | L | -1.4662 | |
11 | L | L | -0.7164 | |
12 | A | L | -0.3980 | |
13 | V | L | -0.9835 | |
14 | S | L | -1.0325 | |
15 | L | L | -0.2057 | |
16 | G | L | -1.2325 | |
17 | E | L | -2.7603 | |
18 | R | L | -2.7963 | |
19 | A | L | 0.0000 | |
20 | T | L | -0.8950 | |
21 | I | L | 0.0000 | |
22 | N | L | -1.9102 | |
23 | C | L | 0.0000 | |
24 | K | L | -2.4357 | |
25 | S | L | 0.0000 | |
26 | S | L | -0.9735 | |
27 | Q | L | -1.5613 | |
28 | S | L | -0.8731 | |
29 | V | L | 0.0000 | |
30 | L | L | -0.1400 | |
31 | Y | L | -0.0540 | |
32 | S | L | -0.7130 | |
33 | S | L | -0.8906 | |
34 | N | L | -1.5480 | |
35 | N | L | -1.8687 | |
36 | K | L | -1.4852 | |
37 | N | L | 0.0000 | |
38 | Y | L | -0.0553 | |
39 | L | L | 0.0000 | |
40 | A | L | 0.0000 | |
41 | W | L | 0.0000 | |
42 | Y | L | 0.0000 | |
43 | Q | L | -0.5090 | |
44 | Q | L | 0.0000 | |
45 | K | L | -1.1796 | |
46 | P | L | -0.8189 | |
47 | G | L | -1.1691 | |
48 | Q | L | -1.5956 | |
49 | P | L | -1.0598 | |
50 | P | L | 0.0000 | |
51 | K | L | -0.9826 | |
52 | L | L | 0.0000 | |
53 | L | L | 0.0000 | |
54 | I | L | 0.0000 | |
55 | Y | L | 0.0000 | |
56 | W | L | -0.3073 | |
57 | A | L | 0.0000 | |
65 | S | L | -0.6343 | |
66 | T | L | -0.5169 | |
67 | R | L | -1.2873 | |
68 | E | L | -0.9101 | |
69 | S | L | -0.7372 | |
70 | G | L | -0.9716 | |
71 | V | L | 0.0000 | |
72 | P | L | -1.3980 | |
74 | D | L | -2.2346 | |
75 | R | L | -1.6358 | |
76 | F | L | 0.0000 | |
77 | S | L | -0.8947 | |
78 | G | L | -0.5410 | |
79 | S | L | -0.7839 | |
80 | G | L | -1.2558 | |
83 | S | L | -1.1826 | |
84 | G | L | -1.0366 | |
85 | T | L | -1.6561 | |
86 | D | L | -2.5610 | |
87 | F | L | 0.0000 | |
88 | T | L | -1.1671 | |
89 | L | L | 0.0000 | |
90 | T | L | -0.7295 | |
91 | I | L | 0.0000 | |
92 | S | L | -1.8256 | |
93 | S | L | -1.8503 | |
94 | L | L | 0.0000 | |
95 | Q | L | -1.3447 | |
96 | A | L | -0.7374 | |
97 | E | L | -1.8774 | |
98 | D | L | 0.0000 | |
99 | V | L | -0.4466 | |
100 | A | L | 0.0000 | |
101 | V | L | -0.5559 | |
102 | Y | L | 0.0000 | |
103 | Y | L | 0.0000 | |
104 | C | L | 0.0000 | |
105 | Q | L | 0.0000 | |
106 | Q | L | 0.0000 | |
107 | Y | L | 0.0000 | |
108 | Y | L | 0.0086 | |
109 | S | L | -0.7186 | |
113 | T | L | -0.7864 | |
114 | P | L | -0.8186 | |
115 | P | L | -1.0106 | |
116 | L | L | 0.0000 | |
117 | T | L | -0.0858 | |
118 | F | L | 0.0000 | |
119 | G | L | 0.0000 | |
120 | G | L | -1.0548 | |
121 | G | L | -1.1506 | |
122 | T | L | 0.0000 | |
123 | K | L | -1.5110 | |
124 | V | L | 0.0000 | |
125 | E | L | -0.7502 | |
126 | I | L | -0.1949 | |
127 | K | L | -1.3272 |