Project name: ee7facba1b1a27f [mutate: IR110H, AG111H, AK111AH]

Status: done

Started: 2025-08-15 09:32:05
Settings
Chain sequence(s) H: QVQLVQSGAEVKKPGASVKVSCKASGYTFTDFYTHWVRQAPGQGLEWMGRINPKSGVTDYAQKFQGRVTMTRDTAISTAYMEVSRLRSDDTAVYYCARDFGIAAVGTDHDAFDIWGQGTMVTVSS
L: DIVMTQSPDSLAVSLGERATINCKSSQSVLYSSNNKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSTPPLTFGGGTKVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues AK111AH,IR110H,AG111H
Energy difference between WT (input) and mutated protein (by FoldX) -1.90924 kcal/mol
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[WARNING]    runJob:   Mutation {"idx": "111", "chain": "A", "oldres": "A", "newres": "K"} likely  
                       tried to mutate a chain that doesn't exist.                                 (00:00:00)
[INFO]       runJob:   Available chains: [u'H', u'L']                                              (00:00:00)
[WARNING]    runJob:   Could not find the requested mutation: {"idx": "111", "chain": "A",         
                       "oldres": "A", "newres": "K"}                                               (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:47)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:51)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:30)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:31)
Show buried residues

Minimal score value
-3.3707
Maximal score value
1.4825
Average score
-0.6397
Total score value
-152.8857

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.2160
2 V H -0.3893
3 Q H -0.5823
4 L H 0.0000
5 V H 0.2153
6 Q H 0.0000
7 S H -0.5503
8 G H -0.5605
9 A H 0.0311
11 E H -0.0650
12 V H 0.9318
13 K H -0.8876
14 K H -2.2972
15 P H -2.5060
16 G H -2.2714
17 A H -1.7412
18 S H -1.7564
19 V H 0.0000
20 K H -1.7126
21 V H 0.0000
22 S H -0.5851
23 C H 0.0000
24 K H -0.4685
25 A H 0.0000
26 S H -0.3670
27 G H -0.7281
28 Y H -0.4141
29 T H -0.4474
30 F H 0.0000
35 T H -1.5973
36 D H -2.2641
37 F H -1.1345
38 Y H -0.4644
39 T H 0.0000
40 H H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.5839
45 A H -0.9759
46 P H -0.9826
47 G H -1.2143
48 Q H -1.7508
49 G H -1.1313
50 L H 0.0000
51 E H -0.6831
52 W H 0.0000
53 M H 0.0000
54 G H 0.0000
55 R H 0.0000
56 I H 0.0000
57 N H -0.4823
58 P H 0.0000
59 K H -1.9589
62 S H -0.6689
63 G H -0.1941
64 V H 1.1119
65 T H 0.5343
66 D H -0.3284
67 Y H -1.0749
68 A H 0.0000
69 Q H -2.5518
70 K H -2.6952
71 F H 0.0000
72 Q H -2.4509
74 G H -1.7925
75 R H -1.8550
76 V H 0.0000
77 T H -0.8118
78 M H 0.0000
79 T H -0.3348
80 R H -0.6177
81 D H -0.2849
82 T H -0.2479
83 A H 0.7141
84 I H 1.4825
85 S H 0.3644
86 T H 0.0000
87 A H 0.0000
88 Y H -0.6677
89 M H 0.0000
90 E H -1.3299
91 V H 0.0000
92 S H -1.8399
93 R H -2.8292
94 L H 0.0000
95 R H -3.3707
96 S H -2.3287
97 D H -2.5297
98 D H 0.0000
99 T H -0.8371
100 A H 0.0000
101 V H 0.2786
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 D H 0.0000
108 F H 0.2117
109 G H -1.1213
110 R H -2.0360 mutated: IR110H
111 G H -1.2468 mutated: AG111H
111A A H -0.1800 mutated: AK111AH
111B V H 0.9617
112C G H -0.1324
112B T H -0.7134
112A D H -1.5267
112 H H 0.0000
113 D H 0.0000
114 A H 0.0000
115 F H 0.0000
116 D H 0.0087
117 I H 0.1618
118 W H 0.0000
119 G H 0.0000
120 Q H -0.9728
121 G H -0.4518
122 T H 0.0000
123 M H 0.3508
124 V H 0.0000
125 T H -0.2568
126 V H 0.0000
127 S H -0.9920
128 S H -0.8319
1 D L -1.5861
2 I L 0.0000
3 V L 0.7349
4 M L 0.0000
5 T L -0.9149
6 Q L -1.4623
7 S L -1.5911
8 P L -1.4227
9 D L -2.3402
10 S L -1.4662
11 L L -0.7164
12 A L -0.3980
13 V L -0.9835
14 S L -1.0325
15 L L -0.2057
16 G L -1.2325
17 E L -2.7603
18 R L -2.7963
19 A L 0.0000
20 T L -0.8950
21 I L 0.0000
22 N L -1.9102
23 C L 0.0000
24 K L -2.4357
25 S L 0.0000
26 S L -0.9735
27 Q L -1.5613
28 S L -0.8731
29 V L 0.0000
30 L L -0.1400
31 Y L -0.0540
32 S L -0.7130
33 S L -0.8906
34 N L -1.5480
35 N L -1.8687
36 K L -1.4852
37 N L 0.0000
38 Y L -0.0553
39 L L 0.0000
40 A L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L -0.5090
44 Q L 0.0000
45 K L -1.1796
46 P L -0.8189
47 G L -1.1691
48 Q L -1.5956
49 P L -1.0598
50 P L 0.0000
51 K L -0.9826
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L 0.0000
56 W L -0.3073
57 A L 0.0000
65 S L -0.6343
66 T L -0.5169
67 R L -1.2873
68 E L -0.9101
69 S L -0.7372
70 G L -0.9716
71 V L 0.0000
72 P L -1.3980
74 D L -2.2346
75 R L -1.6358
76 F L 0.0000
77 S L -0.8947
78 G L -0.5410
79 S L -0.7839
80 G L -1.2558
83 S L -1.1826
84 G L -1.0366
85 T L -1.6561
86 D L -2.5610
87 F L 0.0000
88 T L -1.1671
89 L L 0.0000
90 T L -0.7295
91 I L 0.0000
92 S L -1.8256
93 S L -1.8503
94 L L 0.0000
95 Q L -1.3447
96 A L -0.7374
97 E L -1.8774
98 D L 0.0000
99 V L -0.4466
100 A L 0.0000
101 V L -0.5559
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 Y L 0.0000
108 Y L 0.0086
109 S L -0.7186
113 T L -0.7864
114 P L -0.8186
115 P L -1.0106
116 L L 0.0000
117 T L -0.0858
118 F L 0.0000
119 G L 0.0000
120 G L -1.0548
121 G L -1.1506
122 T L 0.0000
123 K L -1.5110
124 V L 0.0000
125 E L -0.7502
126 I L -0.1949
127 K L -1.3272
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018