Project name: query_structure

Status: done

Started: 2026-03-16 20:38:23
Settings
Chain sequence(s) A: LPAPKNLWSRVTEDSARLSWTAPDAAFDSFWIRYFEFVSKGEAIVLTVPGSERSYDLTGLKPGTEYWNIMGVKGGSISPPLSAIFTT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:40)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:41)
Show buried residues

Minimal score value
-2.7448
Maximal score value
2.3778
Average score
-0.4987
Total score value
-43.3874

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 L A 0.9330
2 P A 0.0642
3 A A -0.2681
4 P A 0.0000
5 K A -1.9911
6 N A -1.5855
7 L A -0.4124
8 W A -0.0067
9 S A -0.6760
10 R A -1.9799
11 V A -1.2491
12 T A -1.6460
13 E A -2.7196
14 D A -2.7448
15 S A -2.2379
16 A A 0.0000
17 R A -2.2286
18 L A 0.0000
19 S A -1.0051
20 W A 0.0000
21 T A -1.3091
22 A A -1.3805
23 P A -1.3334
24 D A -2.2687
25 A A -1.4389
26 A A -1.0768
27 F A 0.0000
28 D A -2.5110
29 S A -1.1368
30 F A 0.0000
31 W A 0.7077
32 I A 0.0000
33 R A 0.0253
34 Y A 1.0228
35 F A 1.2853
36 E A 0.5902
37 F A 1.6741
38 V A 1.0410
39 S A -0.4970
40 K A -1.6290
41 G A -1.5127
42 E A -1.8640
43 A A -0.4241
44 I A 0.6579
45 V A 1.0865
46 L A 0.8638
47 T A 0.2960
48 V A 0.0000
49 P A -1.0672
50 G A 0.0000
51 S A -1.6020
52 E A -1.5125
53 R A -1.1210
54 S A -0.8948
55 Y A -1.0092
56 D A -1.9926
57 L A 0.0000
58 T A -1.5289
59 G A -1.4957
60 L A 0.0000
61 K A -2.0185
62 P A -1.5571
63 G A -0.4780
64 T A 0.9424
65 E A 0.0000
66 Y A 2.0243
67 W A 0.0000
68 N A 0.2695
69 I A 0.0000
70 M A 0.0000
71 G A 0.0000
72 V A -0.3344
73 K A -1.3751
74 G A -1.3054
75 G A -0.9018
76 S A -0.1322
77 I A 1.1195
78 S A 0.0000
79 P A 0.0893
80 P A -0.4039
81 L A -0.6289
82 S A 0.2622
83 A A 1.3564
84 I A 2.3778
85 F A 0.0000
86 T A -0.0349
87 T A -1.5497
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018