Project name: 19a1224b6ed5c9f

Status: done

Started: 2026-06-16 21:45:16
Settings
Chain sequence(s) A: GKITLYEDRGFQGRHYECSSDHPNLQPYLSRCNSARVDSGCWMLYEQPNYSGLQYFLRRGDYADHQQWMGLSDSVRSCRLIPHSGSHRIRLYEREDYRGQMIEFTEDCSCLQDRFRFNEIHSLDVLEGSWVLYELSNYRGRQYLLMPGDYRRYQDWGATNARVGSLRRVIDFS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:49)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:50)
Show buried residues

Minimal score value
-3.8332
Maximal score value
1.4466
Average score
-1.15
Total score value
-198.9491

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -1.5882
2 K A -2.2254
3 I A 0.0000
4 T A -1.7751
5 L A 0.0000
6 Y A -2.2412
7 E A -2.3158
8 D A -3.0488
9 R A -2.8667
10 G A -1.7894
11 F A -2.0452
12 Q A -2.7189
13 G A -2.6943
14 R A -2.8014
15 H A -2.2993
16 Y A -1.1847
17 E A -1.8377
18 C A 0.0000
19 S A -1.2585
20 S A -1.1609
21 D A -1.3552
22 H A -1.4201
23 P A -1.7069
24 N A -1.8145
25 L A 0.0000
26 Q A -1.0047
27 P A -0.3295
28 Y A -0.3606
29 L A 0.0000
30 S A -0.8034
31 R A -1.4289
32 C A 0.0000
33 N A 0.0000
34 S A 0.0000
35 A A 0.0000
36 R A -2.8125
37 V A 0.0000
38 D A -3.1916
39 S A -1.7855
40 G A -0.9989
41 C A 0.0000
42 W A 0.0000
43 M A 0.0000
44 L A 0.0000
45 Y A 0.0000
46 E A -1.4241
47 Q A -1.7012
48 P A -1.7293
49 N A -1.8419
50 Y A -1.1410
51 S A -1.0160
52 G A -0.9395
53 L A -0.5172
54 Q A -0.2124
55 Y A 0.0000
56 F A 0.0602
57 L A 0.0000
58 R A -1.2634
59 R A -2.2794
60 G A -2.3222
61 D A -2.9450
62 Y A -1.9698
63 A A -1.8256
64 D A -2.1047
65 H A 0.0000
66 Q A -2.1393
67 Q A -1.8608
68 W A 0.0000
69 M A -0.8652
70 G A -0.9770
71 L A -0.2720
72 S A -0.9091
73 D A -2.0489
74 S A -1.6261
75 V A 0.0000
76 R A -1.5156
77 S A 0.0000
78 C A 0.0000
79 R A -0.6989
80 L A -0.5344
81 I A 0.0000
82 P A -0.6093
83 H A -0.6750
84 S A -0.7847
85 G A -0.8763
86 S A -1.1783
87 H A 0.0000
88 R A -2.5173
89 I A 0.0000
90 R A -1.0015
91 L A 0.0000
92 Y A -1.6895
93 E A -2.2326
94 R A -3.8332
95 E A -3.5228
96 D A -2.8527
97 Y A -2.3889
98 R A -3.2904
99 G A -2.2758
100 Q A -1.3764
101 M A -0.4629
102 I A -0.5414
103 E A -1.9153
104 F A -1.7390
105 T A -2.2712
106 E A -2.9081
107 D A -2.2432
108 C A 0.0000
109 S A -1.4327
110 C A -1.0932
111 L A 0.0000
112 Q A -2.1171
113 D A -2.9461
114 R A -2.6057
115 F A -1.8846
116 R A -2.4476
117 F A -1.2311
118 N A -1.1080
119 E A -1.8973
120 I A 0.0000
121 H A -2.6645
122 S A 0.0000
123 L A 0.0000
124 D A -1.5279
125 V A 0.0000
126 L A -0.9781
127 E A -1.5347
128 G A -1.1259
129 S A 0.0000
130 W A 0.0000
131 V A 0.0000
132 L A 0.0000
133 Y A 0.0000
134 E A -0.9320
135 L A 0.1103
136 S A -0.7687
137 N A -1.5021
138 Y A -1.0493
139 R A -1.5506
140 G A -0.7318
141 R A -0.5895
142 Q A 0.0000
143 Y A 0.0000
144 L A 0.0000
145 L A 0.0000
146 M A -0.2469
147 P A -0.9722
148 G A -1.2370
149 D A -2.1373
150 Y A -2.2505
151 R A -3.2701
152 R A -2.8948
153 Y A -2.0794
154 Q A -2.6233
155 D A -2.7624
156 W A 0.0000
157 G A -1.7507
158 A A 0.0000
159 T A -1.3753
160 N A -2.0632
161 A A 0.0000
162 R A -1.7748
163 V A 0.0000
164 G A 0.0000
165 S A 0.0000
166 L A 0.0000
167 R A -1.4222
168 R A -1.4651
169 V A 0.0000
170 I A 0.0456
171 D A 0.1477
172 F A 1.4466
173 S A 0.0138
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018