Project name: query_structure

Status: done

Started: 2026-03-17 01:17:06
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Chain sequence(s) A: VSDVPRDLEVVAATPTSLLISWDSPRWWWVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGMPGLKIPLKPISINYRT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:31)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:32)
Show buried residues

Minimal score value
-2.8458
Maximal score value
1.5552
Average score
-0.5589
Total score value
-53.0932

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 V A 1.5552
2 S A -0.0056
3 D A -0.6005
4 V A -0.8581
5 P A 0.0000
6 R A -2.2750
7 D A -2.8458
8 L A 0.0000
9 E A -1.9446
10 V A 0.0711
11 V A 1.5177
12 A A 0.8774
13 A A 0.2926
14 T A -0.5370
15 P A -1.1361
16 T A -1.0063
17 S A -0.5428
18 L A 0.0000
19 L A 0.7168
20 I A 0.0000
21 S A -0.8467
22 W A 0.0000
23 D A -2.1435
24 S A -1.3213
25 P A 0.0000
26 R A -1.3068
27 W A 0.5350
28 W A 1.1685
29 W A 1.1373
30 V A -0.0237
31 R A -1.1446
32 Y A -0.7468
33 Y A 0.0000
34 R A -0.8361
35 I A 0.0000
36 T A -0.6023
37 Y A -0.3512
38 G A 0.0000
39 E A -1.5478
40 T A -1.2216
41 G A -1.2216
42 G A -1.3380
43 N A -1.5205
44 S A -0.8648
45 P A -0.3667
46 V A 0.3474
47 Q A -1.0618
48 E A -1.6508
49 F A -0.7858
50 T A -0.3663
51 V A 0.0000
52 P A -1.1219
53 G A -0.9371
54 S A -1.1214
55 K A -1.7204
56 S A -1.0416
57 T A -0.5759
58 A A 0.0000
59 T A 0.2294
60 I A 0.0000
61 S A -0.6626
62 G A -1.0344
63 L A 0.0000
64 K A -2.3662
65 P A -1.6574
66 G A -1.4302
67 V A -1.4146
68 D A -2.0396
69 Y A 0.0000
70 T A -0.7534
71 I A 0.0000
72 T A -0.1412
73 V A 0.0000
74 Y A 0.0220
75 A A -0.1444
76 V A 0.1109
77 T A 0.5631
78 G A -0.1461
79 M A 0.2606
80 P A -0.3460
81 G A -0.2954
82 L A 0.4096
83 K A -0.5154
84 I A 0.9158
85 P A 0.0122
86 L A -0.2519
87 K A -1.3467
88 P A -0.8105
89 I A -0.4445
90 S A -0.6519
91 I A -0.7051
92 N A -1.6955
93 Y A -1.4347
94 R A -2.5036
95 T A -1.5057
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Laboratory of Theory of Biopolymers 2018