| Chain sequence(s) |
A: GGGHKGG
C: GGGHKGG B: GGGHKGG E: GGGHKGG D: GGGHKGG G: GGGHKGG F: GGGHKGG I: GGGHKGG H: GGGHKGG K: GGGHKGG J: GGGHKGG L: GGGHKGG input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:23)
[INFO] Main: Simulation completed successfully. (00:01:26)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -1.8431 | |
| 2 | G | A | -2.0245 | |
| 3 | G | A | -2.3119 | |
| 4 | H | A | -3.0454 | |
| 5 | K | A | -2.9517 | |
| 6 | G | A | -2.1496 | |
| 7 | G | A | -1.5433 | |
| 1 | G | B | -1.8087 | |
| 2 | G | B | -2.0346 | |
| 3 | G | B | -2.6368 | |
| 4 | H | B | -3.3601 | |
| 5 | K | B | -3.6782 | |
| 6 | G | B | -2.6647 | |
| 7 | G | B | -1.8044 | |
| 1 | G | C | -1.9468 | |
| 2 | G | C | -2.3279 | |
| 3 | G | C | -2.8238 | |
| 4 | H | C | -3.3065 | |
| 5 | K | C | -3.5122 | |
| 6 | G | C | -2.5173 | |
| 7 | G | C | -1.4258 | |
| 1 | G | D | -1.8940 | |
| 2 | G | D | -2.2302 | |
| 3 | G | D | -2.5460 | |
| 4 | H | D | -3.3737 | |
| 5 | K | D | -3.5920 | |
| 6 | G | D | -2.1228 | |
| 7 | G | D | -1.3956 | |
| 1 | G | E | -1.9183 | |
| 2 | G | E | -2.5263 | |
| 3 | G | E | -2.6590 | |
| 4 | H | E | -3.2308 | |
| 5 | K | E | -3.1217 | |
| 6 | G | E | -2.6297 | |
| 7 | G | E | -1.3844 | |
| 1 | G | F | -1.9129 | |
| 2 | G | F | -2.1874 | |
| 3 | G | F | -2.6385 | |
| 4 | H | F | -3.2185 | |
| 5 | K | F | -2.9659 | |
| 6 | G | F | -2.2903 | |
| 7 | G | F | -1.3095 | |
| 1 | G | G | -2.0946 | |
| 2 | G | G | -2.3839 | |
| 3 | G | G | -2.8554 | |
| 4 | H | G | -3.2300 | |
| 5 | K | G | -3.1287 | |
| 6 | G | G | -2.1809 | |
| 7 | G | G | -1.3304 | |
| 1 | G | H | -1.9573 | |
| 2 | G | H | -2.0963 | |
| 3 | G | H | -2.5184 | |
| 4 | H | H | -3.1948 | |
| 5 | K | H | -3.1200 | |
| 6 | G | H | -2.3790 | |
| 7 | G | H | -1.5158 | |
| 1 | G | I | -2.0717 | |
| 2 | G | I | -2.4783 | |
| 3 | G | I | -2.8722 | |
| 4 | H | I | -3.8182 | |
| 5 | K | I | -3.8064 | |
| 6 | G | I | -2.6188 | |
| 7 | G | I | -1.7749 | |
| 1 | G | J | -1.9462 | |
| 2 | G | J | -2.4275 | |
| 3 | G | J | -2.9475 | |
| 4 | H | J | -3.7110 | |
| 5 | K | J | -3.6637 | |
| 6 | G | J | -2.5541 | |
| 7 | G | J | -1.8135 | |
| 1 | G | K | -1.9473 | |
| 2 | G | K | -2.2875 | |
| 3 | G | K | -3.0424 | |
| 4 | H | K | -3.5823 | |
| 5 | K | K | -3.8540 | |
| 6 | G | K | -2.5743 | |
| 7 | G | K | -1.9220 | |
| 1 | G | L | -1.5119 | |
| 2 | G | L | -2.0045 | |
| 3 | G | L | -2.8208 | |
| 4 | H | L | -3.4413 | |
| 5 | K | L | -3.4944 | |
| 6 | G | L | -2.9348 | |
| 7 | G | L | -1.8546 |