Project name: 1a39e975ab067c5

Status: done

Started: 2025-06-03 04:56:52
Settings
Chain sequence(s) H: EVQLVQPGAEVVKPGASVKVSCKASGYTFTSYNMHWVRQAPGRGLEWMGAIYPGNGDTSYNQKFKGRVTMTRDKSTSTVYMELSSLRSEDTAVYYCARSTYYGGDWYFNVWGQGTLVTVSS
L: QIVLSQSPAILSASPGERVTLTCRASSSVSYIHWFQQKPGKAPKPLIYATSNLASGVPSRFSGSGSGTDFSLTISRVEPEDFAVYYCQQWTSNPPTFGGGTKVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:17)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:19)
Show buried residues

Minimal score value
-3.2105
Maximal score value
1.8611
Average score
-0.5314
Total score value
-120.6295

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -2.0368
2 V H -1.0328
3 Q H -1.3847
4 L H 0.0000
5 V H 0.6859
6 Q H 0.0000
7 P H -0.3726
8 G H -0.4554
9 A H 0.1087
11 E H -0.2255
12 V H 1.0824
13 V H -0.4253
14 K H -1.8033
15 P H -1.7635
16 G H -1.3689
17 A H -1.0110
18 S H -1.0671
19 V H 0.0000
20 K H -2.0221
21 V H 0.0000
22 S H -0.5177
23 C H 0.0000
24 K H -0.9414
25 A H 0.0000
26 S H -0.8307
27 G H -1.0573
28 Y H -0.3971
29 T H -0.0863
30 F H 0.0000
35 T H -0.4416
36 S H 0.0465
37 Y H 0.5516
38 N H 0.1002
39 M H 0.0000
40 H H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.6638
45 A H -1.1184
46 P H -1.2313
47 G H -1.5711
48 R H -2.4006
49 G H -1.4715
50 L H 0.0000
51 E H -0.8526
52 W H 0.0000
53 M H 0.0000
54 G H 0.0000
55 A H -0.1922
56 I H 0.0000
57 Y H -0.3242
58 P H 0.0000
59 G H -1.0508
62 N H -1.6973
63 G H -1.4788
64 D H -2.0601
65 T H -0.9625
66 S H -0.7293
67 Y H -0.9762
68 N H 0.0000
69 Q H -2.6570
70 K H -2.8832
71 F H 0.0000
72 K H -2.9639
74 G H -1.8813
75 R H -1.5225
76 V H 0.0000
77 T H -0.8186
78 M H 0.0000
79 T H -0.6215
80 R H -1.0482
81 D H -1.6175
82 K H -1.9087
83 S H -1.1402
84 T H -1.0390
85 S H -1.2564
86 T H 0.0000
87 V H 0.0000
88 Y H -0.6083
89 M H 0.0000
90 E H -1.2869
91 L H 0.0000
92 S H -1.0569
93 S H -1.0955
94 L H 0.0000
95 R H -2.6854
96 S H -2.1408
97 E H -2.4699
98 D H 0.0000
99 T H -0.6854
100 A H 0.0000
101 V H 0.1429
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 S H 0.0000
108 T H 0.0000
109 Y H 1.8611
110 Y H 1.6923
111 G H 0.2567
112A G H -0.0868
112 D H 0.3682
113 W H 0.9481
114 Y H 0.0000
115 F H 0.0000
116 N H -0.1637
117 V H -0.3371
118 W H -0.2245
119 G H 0.0000
120 Q H -1.2373
121 G H 0.0000
122 T H 0.0000
123 L H 0.6853
124 V H 0.0000
125 T H -0.0234
126 V H 0.0000
127 S H -0.6907
128 S H -0.6564
1 Q L -1.0031
2 I L 0.0894
3 V L 1.0628
4 L L 0.0000
5 S L -0.7461
6 Q L -0.6222
7 S L -0.4958
8 P L 0.1619
9 A L 0.4010
10 I L 1.1984
11 L L 0.7661
12 S L 0.1898
13 A L 0.0000
14 S L -1.2757
15 P L -1.3610
16 G L -2.1619
17 E L -2.9964
18 R L -3.2105
19 V L 0.0000
20 T L -0.6528
21 L L 0.0000
22 T L -0.8273
23 C L 0.0000
24 R L -2.1848
25 A L 0.0000
26 S L -0.3794
27 S L -0.5089
28 S L -0.7680
29 V L 0.0000
37 S L -0.3302
38 Y L -0.0455
39 I L 0.0000
40 H L 0.0000
41 W L 0.0000
42 F L 0.0000
43 Q L -0.5805
44 Q L 0.0000
45 K L -1.5292
46 P L -1.1277
47 G L -1.5312
48 K L -2.2430
49 A L -1.3798
50 P L 0.0000
51 K L -0.9445
52 P L -0.3628
53 L L 0.0000
54 I L 0.0000
55 Y L 0.1482
56 A L -0.0216
57 T L 0.0000
65 S L -0.4976
66 N L -0.6653
67 L L 0.0165
68 A L -0.2191
69 S L -0.4038
70 G L -0.4390
71 V L -0.2508
72 P L -0.2565
74 S L -0.4963
75 R L -1.1120
76 F L 0.0000
77 S L -0.4137
78 G L -0.3973
79 S L -0.6452
80 G L -0.9675
83 S L -0.9023
84 G L -0.9106
85 T L -1.3158
86 D L -1.7643
87 F L 0.0000
88 S L -0.7362
89 L L 0.0000
90 T L -0.7878
91 I L 0.0000
92 S L -2.1700
93 R L -3.0188
94 V L 0.0000
95 E L -1.4392
96 P L -0.9975
97 E L -2.0288
98 D L 0.0000
99 F L -0.3427
100 A L 0.0000
101 V L -0.0054
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 W L 0.0000
108 T L -0.3776
109 S L -0.9855
114 N L -1.5848
115 P L -1.3146
116 P L 0.0000
117 T L -0.1914
118 F L 0.0000
119 G L 0.0000
120 G L -0.9033
121 G L -0.5727
122 T L 0.0000
123 K L -0.3262
124 V L 0.0000
125 E L 0.3294
126 I L 0.9142
127 K L -0.8788
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Laboratory of Theory of Biopolymers 2018