| Chain sequence(s) |
A: KKGHKGH
C: KKGHKGH B: KKGHKGH E: KKGHKGH D: KKGHKGH G: KKGHKGH F: KKGHKGH I: KKGHKGH H: KKGHKGH K: KKGHKGH J: KKGHKGH L: KKGHKGH input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:09:16)
[INFO] Main: Simulation completed successfully. (00:09:19)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | K | A | -3.8436 | |
| 2 | K | A | -4.0121 | |
| 3 | G | A | -3.0108 | |
| 4 | H | A | -3.0222 | |
| 5 | K | A | -3.0166 | |
| 6 | G | A | -2.0613 | |
| 7 | H | A | -1.9571 | |
| 1 | K | B | -3.7478 | |
| 2 | K | B | -4.1465 | |
| 3 | G | B | -2.9915 | |
| 4 | H | B | -2.9562 | |
| 5 | K | B | -3.1683 | |
| 6 | G | B | -2.2415 | |
| 7 | H | B | -2.0687 | |
| 1 | K | C | -3.8862 | |
| 2 | K | C | -4.2001 | |
| 3 | G | C | -3.3532 | |
| 4 | H | C | 0.0000 | |
| 5 | K | C | -2.6304 | |
| 6 | G | C | -2.1939 | |
| 7 | H | C | -2.4091 | |
| 1 | K | D | -4.0590 | |
| 2 | K | D | -3.6304 | |
| 3 | G | D | -2.7619 | |
| 4 | H | D | 0.0000 | |
| 5 | K | D | -1.9984 | |
| 6 | G | D | -1.7135 | |
| 7 | H | D | -2.2254 | |
| 1 | K | E | -3.4398 | |
| 2 | K | E | -3.6252 | |
| 3 | G | E | -2.6452 | |
| 4 | H | E | 0.0000 | |
| 5 | K | E | -1.8804 | |
| 6 | G | E | -1.7450 | |
| 7 | H | E | -2.0927 | |
| 1 | K | F | -4.1187 | |
| 2 | K | F | -3.9395 | |
| 3 | G | F | -3.0909 | |
| 4 | H | F | 0.0000 | |
| 5 | K | F | -2.2386 | |
| 6 | G | F | -1.8430 | |
| 7 | H | F | -2.2286 | |
| 1 | K | G | -3.6075 | |
| 2 | K | G | -3.7680 | |
| 3 | G | G | -3.1173 | |
| 4 | H | G | -2.7563 | |
| 5 | K | G | -2.4154 | |
| 6 | G | G | -1.6911 | |
| 7 | H | G | -1.9771 | |
| 1 | K | H | -3.5783 | |
| 2 | K | H | -3.6629 | |
| 3 | G | H | -2.9620 | |
| 4 | H | H | -3.0046 | |
| 5 | K | H | -2.8106 | |
| 6 | G | H | -1.9520 | |
| 7 | H | H | -2.0929 | |
| 1 | K | I | -3.9524 | |
| 2 | K | I | -3.7997 | |
| 3 | G | I | -3.1683 | |
| 4 | H | I | 0.0000 | |
| 5 | K | I | -2.6315 | |
| 6 | G | I | -2.1200 | |
| 7 | H | I | -2.3690 | |
| 1 | K | J | -4.1892 | |
| 2 | K | J | -4.0867 | |
| 3 | G | J | -2.8685 | |
| 4 | H | J | 0.0000 | |
| 5 | K | J | -2.3771 | |
| 6 | G | J | -2.0207 | |
| 7 | H | J | -2.3052 | |
| 1 | K | K | -4.2887 | |
| 2 | K | K | -3.7925 | |
| 3 | G | K | -2.7790 | |
| 4 | H | K | 0.0000 | |
| 5 | K | K | -2.2214 | |
| 6 | G | K | -1.8873 | |
| 7 | H | K | -2.3184 | |
| 1 | K | L | -4.3273 | |
| 2 | K | L | -3.9332 | |
| 3 | G | L | -3.0986 | |
| 4 | H | L | 0.0000 | |
| 5 | K | L | -2.6361 | |
| 6 | G | L | -2.1318 | |
| 7 | H | L | -2.3417 |