Project name: 1a94cef733c22b8

Status: done

Started: 2026-05-21 12:21:36
Settings
Chain sequence(s) A: KKGHKGH
C: KKGHKGH
B: KKGHKGH
E: KKGHKGH
D: KKGHKGH
G: KKGHKGH
F: KKGHKGH
I: KKGHKGH
H: KKGHKGH
K: KKGHKGH
J: KKGHKGH
L: KKGHKGH
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:09:16)
[INFO]       Main:     Simulation completed successfully.                                          (00:09:19)
Show buried residues

Minimal score value
-4.3273
Maximal score value
0.0
Average score
-2.6337
Total score value
-221.2336

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A -3.8436
2 K A -4.0121
3 G A -3.0108
4 H A -3.0222
5 K A -3.0166
6 G A -2.0613
7 H A -1.9571
1 K B -3.7478
2 K B -4.1465
3 G B -2.9915
4 H B -2.9562
5 K B -3.1683
6 G B -2.2415
7 H B -2.0687
1 K C -3.8862
2 K C -4.2001
3 G C -3.3532
4 H C 0.0000
5 K C -2.6304
6 G C -2.1939
7 H C -2.4091
1 K D -4.0590
2 K D -3.6304
3 G D -2.7619
4 H D 0.0000
5 K D -1.9984
6 G D -1.7135
7 H D -2.2254
1 K E -3.4398
2 K E -3.6252
3 G E -2.6452
4 H E 0.0000
5 K E -1.8804
6 G E -1.7450
7 H E -2.0927
1 K F -4.1187
2 K F -3.9395
3 G F -3.0909
4 H F 0.0000
5 K F -2.2386
6 G F -1.8430
7 H F -2.2286
1 K G -3.6075
2 K G -3.7680
3 G G -3.1173
4 H G -2.7563
5 K G -2.4154
6 G G -1.6911
7 H G -1.9771
1 K H -3.5783
2 K H -3.6629
3 G H -2.9620
4 H H -3.0046
5 K H -2.8106
6 G H -1.9520
7 H H -2.0929
1 K I -3.9524
2 K I -3.7997
3 G I -3.1683
4 H I 0.0000
5 K I -2.6315
6 G I -2.1200
7 H I -2.3690
1 K J -4.1892
2 K J -4.0867
3 G J -2.8685
4 H J 0.0000
5 K J -2.3771
6 G J -2.0207
7 H J -2.3052
1 K K -4.2887
2 K K -3.7925
3 G K -2.7790
4 H K 0.0000
5 K K -2.2214
6 G K -1.8873
7 H K -2.3184
1 K L -4.3273
2 K L -3.9332
3 G L -3.0986
4 H L 0.0000
5 K L -2.6361
6 G L -2.1318
7 H L -2.3417
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Laboratory of Theory of Biopolymers 2018