| Chain sequence(s) |
A: FEFEFEGSKGH
C: FEFEFEGSKGH B: FEFEFEGSKGH E: FEFEFEGSKGH D: FEFEFEGSKGH G: FEFEFEGSKGH F: FEFEFEGSKGH I: FEFEFEGSKGH H: FEFEFEGSKGH K: FEFEFEGSKGH J: FEFEFEGSKGH L: FEFEFEGSKGH input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:06:19)
[INFO] Main: Simulation completed successfully. (00:06:23)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 0.9947 | |
| 2 | E | A | -1.9126 | |
| 3 | F | A | -1.8762 | |
| 4 | E | A | -3.7372 | |
| 5 | F | A | -3.2436 | |
| 6 | E | A | -3.6061 | |
| 7 | G | A | -2.8902 | |
| 8 | S | A | -3.0273 | |
| 9 | K | A | -3.3279 | |
| 10 | G | A | -2.9413 | |
| 11 | H | A | -2.4353 | |
| 1 | F | B | 0.7206 | |
| 2 | E | B | -2.2905 | |
| 3 | F | B | -2.2207 | |
| 4 | E | B | -4.3362 | |
| 5 | F | B | -3.0793 | |
| 6 | E | B | -4.1385 | |
| 7 | G | B | -3.0376 | |
| 8 | S | B | -3.1404 | |
| 9 | K | B | -3.5871 | |
| 10 | G | B | -2.9968 | |
| 11 | H | B | -2.4820 | |
| 1 | F | C | 0.0149 | |
| 2 | E | C | -2.6296 | |
| 3 | F | C | 0.0000 | |
| 4 | E | C | -4.2351 | |
| 5 | F | C | -2.9632 | |
| 6 | E | C | -3.7692 | |
| 7 | G | C | -2.7466 | |
| 8 | S | C | -2.7395 | |
| 9 | K | C | -3.2285 | |
| 10 | G | C | -2.7706 | |
| 11 | H | C | -2.3251 | |
| 1 | F | D | -0.0882 | |
| 2 | E | D | -2.5756 | |
| 3 | F | D | 0.0000 | |
| 4 | E | D | -4.0400 | |
| 5 | F | D | -2.8502 | |
| 6 | E | D | -3.5171 | |
| 7 | G | D | -2.6114 | |
| 8 | S | D | -2.4664 | |
| 9 | K | D | -2.9858 | |
| 10 | G | D | -2.6365 | |
| 11 | H | D | -2.2761 | |
| 1 | F | E | 1.0029 | |
| 2 | E | E | -1.6572 | |
| 3 | F | E | -1.9834 | |
| 4 | E | E | -3.5539 | |
| 5 | F | E | -2.8522 | |
| 6 | E | E | -3.5520 | |
| 7 | G | E | -2.6628 | |
| 8 | S | E | -2.8970 | |
| 9 | K | E | -3.3480 | |
| 10 | G | E | -2.9563 | |
| 11 | H | E | -2.4390 | |
| 1 | F | F | 1.2851 | |
| 2 | E | F | -1.5569 | |
| 3 | F | F | -1.7797 | |
| 4 | E | F | -3.5931 | |
| 5 | F | F | -2.8071 | |
| 6 | E | F | -3.5050 | |
| 7 | G | F | -2.7996 | |
| 8 | S | F | -2.9266 | |
| 9 | K | F | -3.4688 | |
| 10 | G | F | -3.2051 | |
| 11 | H | F | -2.4636 | |
| 1 | F | G | 1.1225 | |
| 2 | E | G | -1.5987 | |
| 3 | F | G | -1.9506 | |
| 4 | E | G | -3.9429 | |
| 5 | F | G | -2.9734 | |
| 6 | E | G | -3.7748 | |
| 7 | G | G | -2.8171 | |
| 8 | S | G | -2.8135 | |
| 9 | K | G | -3.0876 | |
| 10 | G | G | -2.7502 | |
| 11 | H | G | -2.3308 | |
| 1 | F | H | 0.2642 | |
| 2 | E | H | -2.3588 | |
| 3 | F | H | -2.1552 | |
| 4 | E | H | -3.9392 | |
| 5 | F | H | -2.8525 | |
| 6 | E | H | -3.8782 | |
| 7 | G | H | -2.8310 | |
| 8 | S | H | -2.6426 | |
| 9 | K | H | -3.1790 | |
| 10 | G | H | -2.7671 | |
| 11 | H | H | -2.3655 | |
| 1 | F | I | -0.3615 | |
| 2 | E | I | -2.7763 | |
| 3 | F | I | -2.4189 | |
| 4 | E | I | -4.1563 | |
| 5 | F | I | -2.9426 | |
| 6 | E | I | -3.7658 | |
| 7 | G | I | -2.8480 | |
| 8 | S | I | -2.8655 | |
| 9 | K | I | -3.1487 | |
| 10 | G | I | -2.8047 | |
| 11 | H | I | -2.3445 | |
| 1 | F | J | -0.1529 | |
| 2 | E | J | -2.6566 | |
| 3 | F | J | 0.0000 | |
| 4 | E | J | -3.9438 | |
| 5 | F | J | -2.6555 | |
| 6 | E | J | -3.5063 | |
| 7 | G | J | -2.5869 | |
| 8 | S | J | -2.6854 | |
| 9 | K | J | -3.4097 | |
| 10 | G | J | -2.6023 | |
| 11 | H | J | -2.2939 | |
| 1 | F | K | 0.9792 | |
| 2 | E | K | -1.8857 | |
| 3 | F | K | -2.0400 | |
| 4 | E | K | -3.8130 | |
| 5 | F | K | -2.8956 | |
| 6 | E | K | -3.6162 | |
| 7 | G | K | -2.5845 | |
| 8 | S | K | -2.6712 | |
| 9 | K | K | -3.3770 | |
| 10 | G | K | -3.0750 | |
| 11 | H | K | -2.4005 | |
| 1 | F | L | 1.1321 | |
| 2 | E | L | -1.5822 | |
| 3 | F | L | -1.6804 | |
| 4 | E | L | -3.4222 | |
| 5 | F | L | -2.7705 | |
| 6 | E | L | -3.5557 | |
| 7 | G | L | -2.8134 | |
| 8 | S | L | -2.6835 | |
| 9 | K | L | -3.4677 | |
| 10 | G | L | -3.0677 | |
| 11 | H | L | -2.3995 |