Project name: RFC16

Status: done

Started: 2025-07-15 15:40:33
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Chain sequence(s) A: MKTTKKETTATSSKNTTISASETVAGGETKKVTLNLELTTPKGKMKQTKTFSGKVAEGGTYTLNSTLEYSTNDSSIVPNIKAKATTEVETE
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:27)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:28)
Show buried residues

Minimal score value
-3.4954
Maximal score value
0.811
Average score
-1.2971
Total score value
-118.0367

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A -0.4909
2 K A -1.8198
3 T A -1.8481
4 T A -2.0347
5 K A -3.2846
6 K A -3.4954
7 E A -3.3024
8 T A -1.5515
9 T A -1.1087
10 A A -0.6818
11 T A -1.3006
12 S A -1.3267
13 S A -1.7168
14 K A -2.8602
15 N A -2.6548
16 T A 0.0000
17 T A -1.1196
18 I A 0.0000
19 S A -0.9461
20 A A -1.1882
21 S A -1.0367
22 E A -0.8156
23 T A -0.3371
24 V A 0.0000
25 A A -0.7931
26 G A -1.6419
27 G A -1.8680
28 E A -2.3711
29 T A -2.2338
30 K A 0.0000
31 K A -2.2124
32 V A 0.0000
33 T A -1.0975
34 L A 0.0000
35 N A -1.5809
36 L A 0.0000
37 E A -2.2420
38 L A 0.0000
39 T A -2.1518
40 T A -1.5704
41 P A -1.5570
42 K A -2.2432
43 G A -1.8541
44 K A -2.6767
45 M A -1.8573
46 K A -2.6268
47 Q A -1.7087
48 T A -1.2301
49 K A -0.8713
50 T A -0.6201
51 F A -0.5194
52 S A -1.0950
53 G A -1.4093
54 K A -2.6551
55 V A 0.0000
56 A A -1.6956
57 E A -2.5559
58 G A -1.4829
59 G A -1.1688
60 T A -0.4633
61 Y A -0.0783
62 T A -0.3265
63 L A -0.6409
64 N A -1.4663
65 S A 0.0000
66 T A -0.9703
67 L A 0.0000
68 E A -2.0196
69 Y A -1.4668
70 S A -1.9088
71 T A -1.8153
72 N A -2.4028
73 D A -1.7451
74 S A -0.9921
75 S A -0.2976
76 I A 0.0000
77 V A 0.8110
78 P A -0.6703
79 N A -1.4987
80 I A 0.0000
81 K A -1.9676
82 A A 0.0000
83 K A -1.8727
84 A A 0.0000
85 T A -2.1799
86 T A 0.0000
87 E A -2.4664
88 V A 0.0000
89 E A -2.3071
90 T A -2.1818
91 E A -2.5990
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Laboratory of Theory of Biopolymers 2018