Project name: 1aed0dac4a8cccf

Status: done

Started: 2026-06-27 15:34:40
Settings
Chain sequence(s) A: GNNQQNY
C: GNNQQNY
B: GNNQQNY
D: GNNQQNY
input PDB
Selected Chain(s) A,C,B,D
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:13)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:14)
Show buried residues

Minimal score value
-2.8822
Maximal score value
1.0907
Average score
-1.5316
Total score value
-42.8851

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -1.5970
2 N A -2.5911
3 N A -2.3471
4 Q A -2.5564
5 Q A -1.5273
6 N A -1.0157
7 Y A 0.9488
1 G B -1.8998
2 N B -2.7706
3 N B -2.8822
4 Q B -2.3783
5 Q B -1.5694
6 N B -0.5511
7 Y B 1.0907
1 G C -1.7224
2 N C -2.5195
3 N C -2.7209
4 Q C -2.4951
5 Q C -1.6789
6 N C -0.6406
7 Y C 1.0834
1 G D -1.5472
2 N D -2.4354
3 N D -2.3060
4 Q D -2.4300
5 Q D -1.6057
6 N D -1.0891
7 Y D 0.8688
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Laboratory of Theory of Biopolymers 2018