| Chain sequence(s) |
A: GNNQQNY
C: GNNQQNY B: GNNQQNY D: GNNQQNY input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:13)
[INFO] Main: Simulation completed successfully. (00:00:14)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -1.5970 | |
| 2 | N | A | -2.5911 | |
| 3 | N | A | -2.3471 | |
| 4 | Q | A | -2.5564 | |
| 5 | Q | A | -1.5273 | |
| 6 | N | A | -1.0157 | |
| 7 | Y | A | 0.9488 | |
| 1 | G | B | -1.8998 | |
| 2 | N | B | -2.7706 | |
| 3 | N | B | -2.8822 | |
| 4 | Q | B | -2.3783 | |
| 5 | Q | B | -1.5694 | |
| 6 | N | B | -0.5511 | |
| 7 | Y | B | 1.0907 | |
| 1 | G | C | -1.7224 | |
| 2 | N | C | -2.5195 | |
| 3 | N | C | -2.7209 | |
| 4 | Q | C | -2.4951 | |
| 5 | Q | C | -1.6789 | |
| 6 | N | C | -0.6406 | |
| 7 | Y | C | 1.0834 | |
| 1 | G | D | -1.5472 | |
| 2 | N | D | -2.4354 | |
| 3 | N | D | -2.3060 | |
| 4 | Q | D | -2.4300 | |
| 5 | Q | D | -1.6057 | |
| 6 | N | D | -1.0891 | |
| 7 | Y | D | 0.8688 |