| Chain sequence(s) |
H: QVQLQQSGAELMKPGASVKISCKATGYTFSNYWIEWVKQRPGHGLEWIGQILPGSGSINYNEEFKGKATFIAGTSSNTAYMHLSSLTSEDSAVYFCARSYGSSFDSWGQGTTLTVSS
L: DIVLTQSPATLSVTPGDSVSLSCRASQSISNDLHWYQQKSHESPRLLIKYASQSFSGIPSRFSGSGSGTDFTLSINSVETEDFGMYFCQQSNNWPLTFGAGTKLELK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:58)
[INFO] Main: Simulation completed successfully. (00:02:00)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.4143 | |
| 2 | V | H | -0.9482 | |
| 3 | Q | H | -1.8205 | |
| 4 | L | H | 0.0000 | |
| 5 | Q | H | -2.1179 | |
| 6 | Q | H | 0.0000 | |
| 7 | S | H | -1.0244 | |
| 8 | G | H | -0.6460 | |
| 9 | A | H | 0.0621 | |
| 11 | E | H | 0.1544 | |
| 12 | L | H | 1.0264 | |
| 13 | M | H | -0.2008 | |
| 14 | K | H | -1.7056 | |
| 15 | P | H | -1.4107 | |
| 16 | G | H | -1.1116 | |
| 17 | A | H | -0.8874 | |
| 18 | S | H | -0.9503 | |
| 19 | V | H | 0.0000 | |
| 20 | K | H | -1.4940 | |
| 21 | I | H | 0.0000 | |
| 22 | S | H | -0.7149 | |
| 23 | C | H | 0.0000 | |
| 24 | K | H | -1.9149 | |
| 25 | A | H | 0.0000 | |
| 26 | T | H | -1.2807 | |
| 27 | G | H | -0.9231 | |
| 28 | Y | H | -0.5712 | |
| 29 | T | H | -0.5494 | |
| 30 | F | H | 0.0000 | |
| 35 | S | H | -0.9638 | |
| 36 | N | H | -1.2139 | |
| 37 | Y | H | -0.0348 | |
| 38 | W | H | 0.3469 | |
| 39 | I | H | 0.0000 | |
| 40 | E | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | K | H | 0.0000 | |
| 44 | Q | H | -0.6355 | |
| 45 | R | H | -1.3281 | |
| 46 | P | H | -1.0095 | |
| 47 | G | H | -1.2267 | |
| 48 | H | H | -1.4995 | |
| 49 | G | H | -0.8269 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | 0.0000 | |
| 52 | W | H | 0.0000 | |
| 53 | I | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | Q | H | 0.0000 | |
| 56 | I | H | 0.0000 | |
| 57 | L | H | 0.0471 | |
| 58 | P | H | 0.0000 | |
| 59 | G | H | -0.9381 | |
| 62 | S | H | -0.7045 | |
| 63 | G | H | -0.3121 | |
| 64 | S | H | 0.0251 | |
| 65 | I | H | 0.6201 | |
| 66 | N | H | -0.2773 | |
| 67 | Y | H | -0.9172 | |
| 68 | N | H | 0.0000 | |
| 69 | E | H | -3.1271 | |
| 70 | E | H | -3.2306 | |
| 71 | F | H | 0.0000 | |
| 72 | K | H | -3.0785 | |
| 74 | G | H | -1.8902 | |
| 75 | K | H | -1.4207 | |
| 76 | A | H | 0.0000 | |
| 77 | T | H | -0.3908 | |
| 78 | F | H | 0.0000 | |
| 79 | I | H | 1.0886 | |
| 80 | A | H | 0.1741 | |
| 81 | G | H | -0.3380 | |
| 82 | T | H | -0.4981 | |
| 83 | S | H | -0.5538 | |
| 84 | S | H | -0.8286 | |
| 85 | N | H | -1.1693 | |
| 86 | T | H | 0.0000 | |
| 87 | A | H | 0.0000 | |
| 88 | Y | H | 0.0811 | |
| 89 | M | H | 0.0000 | |
| 90 | H | H | -0.7715 | |
| 91 | L | H | 0.0000 | |
| 92 | S | H | -0.7595 | |
| 93 | S | H | -0.8386 | |
| 94 | L | H | 0.0000 | |
| 95 | T | H | -1.2986 | |
| 96 | S | H | -1.3850 | |
| 97 | E | H | -1.9444 | |
| 98 | D | H | 0.0000 | |
| 99 | S | H | -0.6409 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.0669 | |
| 102 | Y | H | 0.0000 | |
| 103 | F | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | R | H | 0.0000 | |
| 107 | S | H | 0.0000 | |
| 108 | Y | H | 1.1346 | |
| 109 | G | H | 0.2193 | |
| 113 | S | H | 0.0000 | |
| 114 | S | H | 0.0000 | |
| 115 | F | H | 0.0000 | |
| 116 | D | H | 0.0463 | |
| 117 | S | H | -0.2885 | |
| 118 | W | H | 0.0000 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.6908 | |
| 121 | G | H | -0.9081 | |
| 122 | T | H | 0.0000 | |
| 123 | T | H | 0.0101 | |
| 124 | L | H | 0.0000 | |
| 125 | T | H | -0.0310 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.6499 | |
| 128 | S | H | -0.7898 | |
| 1 | D | L | -1.4701 | |
| 2 | I | L | 0.0000 | |
| 3 | V | L | 0.7566 | |
| 4 | L | L | 0.0000 | |
| 5 | T | L | -0.4360 | |
| 6 | Q | L | 0.0000 | |
| 7 | S | L | -0.5654 | |
| 8 | P | L | -0.2815 | |
| 9 | A | L | -0.1903 | |
| 10 | T | L | -0.4408 | |
| 11 | L | L | -0.2552 | |
| 12 | S | L | -0.5345 | |
| 13 | V | L | 0.0000 | |
| 14 | T | L | -0.8680 | |
| 15 | P | L | -1.1194 | |
| 16 | G | L | -1.3168 | |
| 17 | D | L | -1.2473 | |
| 18 | S | L | -1.0892 | |
| 19 | V | L | -0.4702 | |
| 20 | S | L | -0.4088 | |
| 21 | L | L | 0.0000 | |
| 22 | S | L | -0.8213 | |
| 23 | C | L | 0.0000 | |
| 24 | R | L | -2.2418 | |
| 25 | A | L | 0.0000 | |
| 26 | S | L | -1.0052 | |
| 27 | Q | L | -1.8862 | |
| 28 | S | L | -1.5419 | |
| 29 | I | L | 0.0000 | |
| 36 | S | L | -1.1149 | |
| 37 | N | L | -1.2094 | |
| 38 | D | L | -0.9750 | |
| 39 | L | L | 0.0000 | |
| 40 | H | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | -0.7903 | |
| 45 | K | L | -1.1159 | |
| 46 | S | L | -1.0393 | |
| 47 | H | L | -1.6764 | |
| 48 | E | L | -1.6752 | |
| 49 | S | L | -1.0935 | |
| 50 | P | L | 0.0000 | |
| 51 | R | L | -0.5851 | |
| 52 | L | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | K | L | -0.5703 | |
| 56 | Y | L | -0.4455 | |
| 57 | A | L | 0.0000 | |
| 65 | S | L | -1.0132 | |
| 66 | Q | L | -1.2584 | |
| 67 | S | L | -0.6680 | |
| 68 | F | L | -0.2144 | |
| 69 | S | L | -0.3576 | |
| 70 | G | L | -0.4098 | |
| 71 | I | L | -0.1342 | |
| 72 | P | L | -0.2374 | |
| 74 | S | L | -0.5337 | |
| 75 | R | L | -1.0028 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.8304 | |
| 78 | G | L | -0.6497 | |
| 79 | S | L | -0.8436 | |
| 80 | G | L | -1.1194 | |
| 83 | S | L | -1.2135 | |
| 84 | G | L | -1.3538 | |
| 85 | T | L | -1.7729 | |
| 86 | D | L | -2.0673 | |
| 87 | F | L | 0.0000 | |
| 88 | T | L | -0.7657 | |
| 89 | L | L | 0.0000 | |
| 90 | S | L | -0.6267 | |
| 91 | I | L | 0.0000 | |
| 92 | N | L | -1.8212 | |
| 93 | S | L | -1.4826 | |
| 94 | V | L | 0.0000 | |
| 95 | E | L | -1.7682 | |
| 96 | T | L | -0.8582 | |
| 97 | E | L | -1.1626 | |
| 98 | D | L | 0.0000 | |
| 99 | F | L | -0.2854 | |
| 100 | G | L | 0.0000 | |
| 101 | M | L | -0.3040 | |
| 102 | Y | L | 0.0000 | |
| 103 | F | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | Q | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | S | L | -0.6208 | |
| 108 | N | L | -1.3064 | |
| 109 | N | L | -1.1496 | |
| 114 | W | L | -0.0129 | |
| 115 | P | L | -0.6466 | |
| 116 | L | L | 0.0000 | |
| 117 | T | L | 0.0288 | |
| 118 | F | L | 0.0000 | |
| 119 | G | L | 0.0000 | |
| 120 | A | L | -0.1012 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -0.6856 | |
| 124 | L | L | 0.0000 | |
| 125 | E | L | -0.4767 | |
| 126 | L | L | 0.2962 | |
| 127 | K | L | -1.1929 |